Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq76 102 2e-16 seq55 93.3 9e-14 >seq76 Length=120750 Score = 102 bits (112), Expect = 2e-16 Identities = 397/611 (65%), Gaps = 26/611 (4%) Strand=Plus/Minus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || |||| ||| |||||| |||| || ||||| || ||||| || || ||||| || Sbjct 112213 ACGCCGGCCTTCTGGTACTCCCCCACCCTCTTCTCGAAGAAGTTCGTTTTGCCCTGCAGC 112154 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGC 157363 || ||||| ||||| | ||||| || | | ||| ||| ||| || | || ||| Sbjct 112153 GAGATCATCTCCATGAAATCGAACGGCTGCGTCGAGTGGTAGTGCTTCTCCTCGCCGAGC 112094 Query 157364 TGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATA 157423 |||| |||||| || |||| |||||||| | ||| || | || | || Sbjct 112093 GACACCAGCAGCCGGTCCGCGACGAACTCGATGTACTGCGCCATCAGCTCCGCGTTCATG 112034 Query 157424 CCGATGAGCGCGACGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACAGCGTG 157482 || || ||| || || ||||| | || | ||||| |||| ||| | | | || || | Sbjct 112033 CCAATCAGCCGCACCGGCAGCGC-GTCGCAGATGAACTCGCGCTCGATGTTCACCGCATC 111975 Query 157483 CTTGAAAATTTCATGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTGTAGAT 157539 | | || || | || | ||| ||||||||| | | ||||| ||| ||||| | Sbjct 111974 CACAATGATCTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAG 111915 Query 157540 GAGA-ACG-GAAG-CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAA 157596 || | | |||| ||||| || || || ||||| | | |||||| ||| ||| Sbjct 111914 CAGGCATGCGAAGTCCGTG---TGTAGACCCTCGTCGCGCGAGATGAGCTCGTTGCTGAA 111858 Query 157597 CGACAAACCCTTGAACTTCTGCC---GCTTCTTCAGCCAGTAGATGGCGCAGAACGACCC 157653 || || |||| | | || | | |||||||||||||| | | |||||||||||||| Sbjct 111857 CGTCAG-CCCTGGCA--TCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCC 111801 Query 157654 ACTGAACTGCACGCCCTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAAGCGGT 157713 || | |||||||| || ||||||| |||| |||| |||| | | Sbjct 111800 GGAAAAGAAAATGCCCTCCACCGCGGCAAAGCCGATCAGCCGCTCC-----TGAA-AGCT 111747 Query 157714 TTCGGGGTTC---ATCCACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGT 157770 || | || |||||| | | ||||| ||||||||| | |||| || ||||| Sbjct 111746 CGCGCTGCTCCCGATCCACCGCACGGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGT 111687 Query 157771 CTGGATAGATCGCATGACGTGTCTCTGCTCTTCCGTGTCCCTGAAGTAAGTCTGAATAAG 157830 ||| || | ||| | | || ||| || ||||| ||| ||| || | | || Sbjct 111686 CTGTATCGCGTGCAGCAGCCGCAGCTTCTCCTCGCTGTCCGTGATGTACGTGTCCAGCAG 111627 Query 157831 CAGAGAGTACG 157841 || |||||||| Sbjct 111626 CACAGAGTACG 111616 >seq55 Length=202884 Score = 93.3 bits (102), Expect = 9e-14 Identities = 395/611 (65%), Gaps = 26/611 (4%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || |||| ||| |||||| |||| | |||| || ||||| || || ||||| || Sbjct 179788 ACGCCGGCCTTCTGGTACTCCCCCACCTTCCTCTCGAAGAAGTTTGTTTTGCCCTGCAGC 179847 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGC 157363 || ||||| ||||| | ||||| || | | ||| ||| ||| || | || ||| Sbjct 179848 GAGATCATCTCCATGAATTCGAACGGCTGCGTCGAGTGGTAGTGCTTCTCCTCGCCGAGC 179907 Query 157364 TGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATA 157423 |||| |||||| || |||| |||||||| | ||| || | || | || Sbjct 179908 GACACCAGCAGCCGGTCCGCGACGAACTCGATGTACTGCGCCATCAACTCCGCGTTCATG 179967 Query 157424 CCGATGAGCGCGACGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACAGCGTG 157482 || || ||| || || ||||| | || | ||||| |||| ||| | | | || || | Sbjct 179968 CCAATCAGCCGCACCGGCAGCGC-GTCGCAGATGAACTCGCGCTCGATGTTCACCGCATC 180026 Query 157483 CTTGAAAATTTCATGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTGTAGAT 157539 | | ||| || | || | ||| ||||||||| | | ||||| ||| ||||| | Sbjct 180027 CACAATAATCTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAG 180086 Query 157540 GAGA-ACG-GAAG-CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAA 157596 || | | |||| ||||| || || || ||||| | | |||||| ||| ||| Sbjct 180087 CAGGCATGCGAAGTCCGTG---TGTAGACCCTCGTCGCGCGAGATGAGCTCGTTGCTGAA 180143 Query 157597 CGACAAACCCTTGAACTTCTGCC---GCTTCTTCAGCCAGTAGATGGCGCAGAACGACCC 157653 || || |||| | | || | | |||||||||||||| | | |||||||||||||| Sbjct 180144 CGTCAG-CCCTGGCA--TCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCC 180200 Query 157654 ACTGAACTGCACGCCCTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAAGCGGT 157713 || | |||||||| || ||||||| |||| |||| |||| | | Sbjct 180201 GGAAAAAAAAATGCCCTCCACCGCGGCAAAGCCGATCAGCCGCTCC-----TGAA-AGCT 180254 Query 157714 TTCGGGGTTC---ATCCACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGT 157770 | | || |||||| | | ||||| ||||||||| | |||| || ||||| Sbjct 180255 CGCACTGCTCCCGATCCACCGCACGGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGT 180314 Query 157771 CTGGATAGATCGCATGACGTGTCTCTGCTCTTCCGTGTCCCTGAAGTAAGTCTGAATAAG 157830 ||| || | ||| | | || ||| || ||||| ||| ||| || | | || Sbjct 180315 CTGTATCGCGTGCAGCAGCCGCAGCTTCTCCTCGCTGTCCGTGATGTACGTGTCCAGCAG 180374 Query 157831 CAGAGAGTACG 157841 || |||||||| Sbjct 180375 CACAGAGTACG 180385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073759631245056