Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2 354 7e-93 seq55 205 8e-48 seq76 201 1e-46 seq15 96.9 3e-15 seq485 93.3 4e-14 seq27 93.3 4e-14 >seq2 Length=1059033 Score = 354 bits (392), Expect = 7e-93 Identities = 558/792 (70%), Gaps = 8/792 (1%) Strand=Plus/Minus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 || || ||||| || ||||| || ||| ||| | ||||||||||| ||||| || Sbjct 329670 GCAATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACGTGTACTCGACAATCTCC 329611 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 || ||||| || ||||| |||||||| | ||| ||||||| || | ||||| Sbjct 329610 GTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCAT 329551 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 | ||||||||||| ||| ||||| ||||||||||| ||||||||| | ||| || | Sbjct 329550 GCGTCCTTGTAGAGGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATGGCAAAC 329491 Query 23201 CACATAGTCTGAGCGTGAACACGTC-GCACGTACCTGCCTTCTTCCTCGTACTTTTGGTA 23259 |||| ||| || || | |||| ||| | ||| || |||||| | ||| Sbjct 329490 CACACCTCCTGGGCCTGGA-TCGTCTTGACGCCGCGGCCCTCGGACTCGTAGCGCTCGTA 329432 Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG-CCGGGCGATTGCATCGGACACA 23318 | | ||||| || |||| || || ||| ||| |||||| || | ||| || Sbjct 329431 GAGCCGCTCAAACTCCTCACCATAGCAATCGCTGAGGCCCGGGCACGTG-TTGGGATCCA 329373 Query 23319 TGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAG 23378 | || ||||| | || ||| || || |||||||| ||||| || ||||| || | Sbjct 329372 TCAGCGTCCACTTCCCCTCGCTTTTCACACGCCTCATAAACAGATCTGGGATCCACAGCG 329313 Query 23379 CGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAA 23438 | ||||| || |||||||||||| || ||||| || ||||| ||||| || || Sbjct 329312 CATAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTCAGCAGCAGAA 329253 Query 23439 AGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 || | || ||||| || ||||| |||||||| || |||||||| |||||| | |||| Sbjct 329252 AGCCAAAGACGTCGGCGTGCCAGGGCTCGAGATAGACGGCAAAGGCGCCCTTGCGCTTAC 329193 Query 23499 TGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGAC 23558 ||| ||||| || ||||| ||||| ||||||||| | || | |||||| |||||||| | Sbjct 329192 CGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCC 329133 Query 23559 CGTTGGACGCGCCG--CCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAAC 23616 |||| |||| |||| | || || || | | || || || | |||||| || Sbjct 329132 CGTTCGACGTGCCGTTCGTA--CCAGCTATATAGCTGCCCGCCGCGCGGATGTTGTGCAC 329075 Query 23617 GTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTA 23676 ||| | || || || ||| ||| ||| |||| |||||| | ||||| |||||||| Sbjct 329074 GTGCAGGCCAATACCGCCGGCCGCTTTGCTGATCACCGCGCACTCCTTCAGCGTGTCGTA 329015 Query 23677 GATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTT 23736 |||||| ||||||||||| || || | ||| |||| ||| ||||| |||||||| || Sbjct 329014 GATGCCGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTT 328955 Query 23737 GGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAG 23796 || || |||| || || |||||| ||||||| || ||| | || || ||||| || Sbjct 328954 CGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTGGACATGAG 328895 Query 23797 ATTGTACGTGTC 23808 | |||||| || Sbjct 328894 GTCGTACGTCTC 328883 Score = 107 bits (118), Expect = 2e-18 Identities = 286/432 (66%), Gaps = 9/432 (2%) Strand=Plus/Minus Query 22453 GTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGG 22512 |||||| || | ||||||||| || |||||||| ||| ||||| || ||||| || Sbjct 330244 GTTCACAACAGGGAACTCGCCGCTCAGCACGCGGCGGACGTAGATGTTCGAGGTGAAGGG 330185 Query 22513 TTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAA 22572 ||||| | || ||||| || || ||||| | ||| || ||||| ||||| || || | Sbjct 330184 CTCGAAGCACTCGTTGTTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGGGGCAAC 330125 Query 22573 CAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCA 22632 ||| || ||||| | || ||| || | || |||||| | | ||||||||| Sbjct 330124 CAGCAGGGAGTTGCGCATGCCCACCTGCATCACCTTCTCCTTGAGGCTGGCCCAGTCCCA 330065 Query 22633 CAGATCGGAC---GGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGC 22689 || || ||| | |||| | |||||| ||| | |||| | ||| || || Sbjct 330064 GCGACCGCTGTTGGGCCGCGCATTCTTCCACATGTCGAACTGCAGAATGCCCTCGCTGGC 330005 Query 22690 CGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGC-TCGCCT 22748 ||||||||| | | || |||||||| || | | || || || || | || || Sbjct 330004 CGGGCTGCCCGTGAAGGTCTCGTACGGGCCCTCCTCCTTCGCCAGCTC-CATCGACGACT 329946 Query 22749 CCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGC 22808 | | ||| | | || || || |||||||| | | ||||| | || ||| | ||| Sbjct 329945 CGACCGCAGCAAAGTAGATCGTTTCGAAGATCTCCGCGTTCA--CCCGCTGCGCCTCCGC 329888 Query 22809 --TTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACC 22866 | |||||| ||||| | | ||| |||||||| | ||||| ||||| | || Sbjct 329887 CGAGACAAACGGCAGCCGCATGAGGATGAAGGCGTCCGCGAGCCCCTGCACGCCGAGGCC 329828 Query 22867 GATCGGTCGGTT 22878 ||| || ||||| Sbjct 329827 GATGGGGCGGTT 329816 >seq55 Length=202884 Score = 205 bits (226), Expect = 8e-48 Identities = 510/762 (67%), Gaps = 18/762 (2%) Strand=Plus/Minus Query 57678 TTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTG 57737 || || || || ||| | || || ||||||| ||| || || || | ||||||| | Sbjct 180533 TTCATCAAGCATGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATAGTCATCGAGAATCTT 180474 Query 57738 GTCGAAAGATTTTCACAAG--AAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTC 57795 | || | | |||| || | ||| | ||| | |||||| | || ||||| || | Sbjct 180473 G-CGCA-GCGCTTCATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTTCC 180416 Query 57796 AAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGA 57855 | || || || ||| | || || || | ||| || | || | || |||||| | | Sbjct 180415 AGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCTGCTGGACACGTACATCA 180356 Query 57856 AGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCG-ATCGCC 57914 ||||| ||| ||||| | | ||| | ||||||| | || || |||| | ||| Sbjct 180355 CGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATACAGACGAT-CCCGTGCATCCAG 180297 Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGG 57974 |||||||| |||||| | | ||||| ||| | || | || ||| || Sbjct 180296 AAGAAGGCGGAGTGGGCCGTGCGGTGGATCGGGAGC---AGTGCGAGCTTTCAGGAGCGG 180240 Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTC-GGGCAGCTTTGCGGCAATATT 58033 || |||| || ||||| || || || || || ||||| ||| | | |||| | | || Sbjct 180239 CTGATCGGCTTTGCCGCGGTGGAGGGCATTTTTTTTTCCGGGTCGTTCTGCG-CGCTGTT 180181 Query 58034 TTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCG 58093 ||| ||||||| ||||| |||||||| || |||||||| ||||||||| | || ||||| Sbjct 180180 CTGGCTGAAGAAGCGCGGTCTGATGCCAGGGCTGACGTTCAGCAACGAGCTCATCTCGCG 180121 Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGT---ACTCTCACATTGTCAATAA 58150 |||||||||||| || || || || || ||||| ||| |||| ||||| | || Sbjct 180120 CGACGAGGGTCTACACACGGACTTCGCATGCCTGCTGTACAACTCGCACATCAAGCACAA 180061 Query 58151 ACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTT 58210 | | |||| || ||| | |||| ||||| || ||||| ||||| ||||| Sbjct 180060 GCTGCCGCGCGAGCGCGTGCTGGAGATTATTGTGGATGCGGTGAACATCGAGCGCGAGTT 180001 Query 58211 TGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTA 58270 || ||| || || |||||| || | || |||||| || |||||| | |||| Sbjct 180000 CATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCATGAACGCGGAGTTGATGGCGCAGTA 179941 Query 58271 CATTGAGTTTGTTGCCGACAGACTTTTG--CTCGAACTGATTGGAGAGCGTCATTACAAC 58328 ||| ||||| || || ||| | || || ||| | | ||||| || ||| || Sbjct 179940 CATCGAGTTCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGA--AGCACTACCAC 179883 Query 58329 ACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTC 58388 ||| | ||||| || || ||| | |||||||||| ||||||| |||||||| ||| Sbjct 179882 TCGACGCAGCCGTTCGAATTCATGGAGATGATCTCGCTGCAGGGCAAAACAAACTTCTTC 179823 Query 58389 GaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGC 58430 || | || || | || || || || ||||||||||||| Sbjct 179822 GAGAGGAAGGTGGGGGAGTACCAGAAGGCCGGCGTGATGAGC 179781 >seq76 Length=120750 Score = 201 bits (222), Expect = 1e-46 Identities = 510/762 (67%), Gaps = 18/762 (2%) Strand=Plus/Plus Query 57678 TTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTG 57737 || || || || ||| | || || ||||||| ||| || || || | ||||||| | Sbjct 111468 TTCATCAAGCATGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATAGTCATCGAGAATCTT 111527 Query 57738 GTCGAAAGATTTTCACAAG--AAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTC 57795 | || | | |||| || | ||| | ||| | |||||| | || ||||| || | Sbjct 111528 G-CGCA-GCGCTTCATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTTCC 111585 Query 57796 AAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGA 57855 | || || || ||| | || || || | ||| || | || | || |||||| | | Sbjct 111586 AGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCTGCTGGACACGTACATCA 111645 Query 57856 AGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCG-ATCGCC 57914 ||||| ||| ||||| | | ||| | ||||||| | || || |||| | ||| Sbjct 111646 CGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATACAGACGAT-CCCGTGCATCCAG 111704 Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGG 57974 |||||||| |||||| | | ||||| ||| | || | ||| ||| || Sbjct 111705 AAGAAGGCGGAGTGGGCCGTGCGGTGGATCGGGAGCAGCGCGAGCT--TTCAG-GAGCGG 111761 Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTC-GGGCAGCTTTGCGGCAATATT 58033 || |||| || ||||| || || || || |||||||| ||| | | |||| | | || Sbjct 111762 CTGATCGGCTTTGCCGCGGTGGAGGGCATTTTCTTTTCCGGGTCGTTCTGCG-CGCTGTT 111820 Query 58034 TTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCG 58093 ||| ||||||| ||||| |||||||| || |||||||| ||||||||| | || ||||| Sbjct 111821 CTGGCTGAAGAAGCGCGGTCTGATGCCAGGGCTGACGTTCAGCAACGAGCTCATCTCGCG 111880 Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGT---ACTCTCACATTGTCAATAA 58150 |||||||||||| || || || || || ||||| ||| |||| ||||| | || Sbjct 111881 CGACGAGGGTCTACACACGGACTTCGCATGCCTGCTGTACAACTCGCACATCAAGCACAA 111940 Query 58151 ACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTT 58210 | | |||| || ||| | |||| || || || ||||| ||||| ||||| Sbjct 111941 GCTGCCGCGCGAGCGCGTGCTGGAGATCATTGTGGATGCGGTGAACATCGAGCGCGAGTT 112000 Query 58211 TGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTA 58270 || ||| || || |||||| || | || |||||| || ||||| | |||| Sbjct 112001 CATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCATGAACGCGGAGCTGATGGCGCAGTA 112060 Query 58271 CATTGAGTTTGTTGCCGACAGACTTTTG--CTCGAACTGATTGGAGAGCGTCATTACAAC 58328 ||| ||||| || || ||| | || || ||| | | ||||| || ||| || Sbjct 112061 CATCGAGTTCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGA--AGCACTACCAC 112118 Query 58329 ACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTC 58388 ||| | ||||| ||||| ||| | |||||||||| ||||||| || ||||| ||| Sbjct 112119 TCGACGCAGCCGTTCGATTTCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTCTTC 112178 Query 58389 GaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGC 58430 || || | || | || || || || ||||||||||||| Sbjct 112179 GAGAAGAGGGTGGGGGAGTACCAGAAGGCCGGCGTGATGAGC 112220 >seq15 Length=500758 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| |||||||||||| | | || || || ||| Sbjct 223946 CATGCAGATCTTCGTGAAGACGCTGACCGGCAAAACGATCGCGCTGGAGGTGGAGCCGAG 224005 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || || | || ||||||||| ||| | ||||| ||||| Sbjct 224006 CGACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 224065 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| || || ||||| ||||| ||| |||| || Sbjct 224066 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGA 224101 >seq485 Length=1379 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| |||||| | | || || || ||| Sbjct 177 CATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAG 118 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || || | || ||||||||| ||| | ||||| ||||| Sbjct 117 CGACACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 58 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| || || ||||| ||||| ||| |||| || Sbjct 57 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGA 22 >seq27 Length=379527 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| |||||| | | || || || ||| Sbjct 286 CATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAG 345 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || || | || ||||||||| ||| | ||||| ||||| Sbjct 346 CGACACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCA 405 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| || || ||||| ||||| ||| |||| || Sbjct 406 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGA 441 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31209 AGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGG 31268 |||| ||||| ||||| |||||| | | || || || ||| ||||| |||| | | Sbjct 186 AGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGCGACACGATCGAGAACG 127 Query 31269 TCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCG 31328 | || | || ||||||||| ||| | ||||| |||||||||||||| || |||| Sbjct 126 TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGTCTGATCTTCG 67 Query 31329 CTGGCAAACAGTTGGAAGAC 31348 | ||||| ||| |||| ||| Sbjct 66 CCGGCAAGCAGCTGGAGGAC 47 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763658536640