Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq27 93.3 4e-14 seq55 87.8 2e-12 seq15 87.8 2e-12 seq485 82.4 8e-11 >seq27 Length=379527 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139534 ATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC 139593 || |||||| || | |||| || | ||| | ||| ||||| || || ||||| || || Sbjct 517 ATAGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTC 458 Query 139594 GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 139653 | |||| || || ||||| || || || ||||||| || ||||| || || Sbjct 457 CGAGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGG 398 Query 139654 AGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || ||||| || ||||| ||| || || | | || | |||||| | ||||| Sbjct 397 CGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTC 338 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| | | | |||||||||||||| ||| || ||||| || ||||| Sbjct 337 CACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 287 >seq55 Length=202884 Score = 87.8 bits (96), Expect = 2e-12 Identities = 296/450 (66%), Gaps = 12/450 (3%) Strand=Plus/Minus Query 52618 GAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttC-GGGTAGTTTTGCGGC 52676 || || ||| ||| ||||| ||||| || | |||||||| |||| ||| |||| | Sbjct 180245 GAGCGGCTGATCGGCTTTGCCGCGGTGGAGGGCATTTTTTTTTCCGGGTCGTTCTGCG-C 180187 Query 52677 AATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGA 52735 | || | | || || | || | | ||||| || || ||||| ||||||||| | | Sbjct 180186 GCTGTTCTGGCTGAAGAAGCGCGGTC-TGATGCCAGGGCTGACGTTCAGCAACGAGCTCA 180128 Query 52736 TATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTGTATTATAATACGCGCGTTA 52795 | ||||||||||| || | ||||| || || || || || || || ||| | | | Sbjct 180127 TCTCGCGCGACGAGGGTCTACACACGGACTTCGCATGCCTGCTGTACAACTCGCACATCA 180068 Query 52796 AAGAAAAATTGTCATATGAAAAAATTCTAGACATGTTTAAAGAGGCCGTCGACATTGAAA 52855 | | || || | || | || || || || || || || |||| || Sbjct 180067 AGCACAAGCTGCCGCGCGAGCGCGTGCTGGAGATTATTGTGGATGCGGTGAACATCGAGC 180008 Query 52856 AAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAACGCGACCATGATGT 52915 ||||| | ||||| | || || || | |||||||||||| ||||| Sbjct 180007 GCGAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCATGAACGCGGAGTTGATG- 179949 Query 52916 GCG-AGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTCGGTCAGCCGAAATAC 52974 ||| ||||||||||||| || |||||| | ||| || || |||||| || ||| || Sbjct 179948 GCGCAGTACATCGAGTTCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCAC 179889 Query 52975 TATAATGCG-CGTAACCCCTTTTCG--TTTATGAACAACATATCGCTCGAGGGCAAAACA 53031 || | || || | || |||| || ||| | | || ||||| ||||||||||| Sbjct 179888 TACCACTCGACGCAGCCG---TTCGAATTCATGGAGATGATCTCGCTGCAGGGCAAAACA 179832 Query 53032 AACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 ||||| |||||||| ||||| |||||| Sbjct 179831 AACTTCTTCGAGAGGAAGGTGGGGGAGTAC 179802 >seq15 Length=500758 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | |||| || | ||| | ||| ||||| || || ||||| || || Sbjct 224174 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGA 224115 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || || ||||| || || || ||||||| || ||||| || || || Sbjct 224114 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGG 224055 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | |||||| | |||||||| Sbjct 224054 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCGGCTCCAC 223995 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | | | ||| |||||||||| ||| || ||||| || ||||| Sbjct 223994 CTCCAGCGCGATCGTTTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 223947 >seq485 Length=1379 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || || || ||||||| || ||||| || || || ||||| || ||| Sbjct 22 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 81 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | |||||| | ||||||||||| | | | | Sbjct 82 TCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATC 141 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| ||| || ||||| || ||||| Sbjct 142 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496060949206400