Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq76 156 6e-33 seq55 143 4e-29 seq2 132 7e-26 >seq76 Length=120750 Score = 156 bits (172), Expect = 6e-33 Identities = 581/890 (65%), Gaps = 38/890 (4%) Strand=Plus/Plus Query 124994 CCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 ||| || || ||| ||| |||||||| ||| | |||||| || || || | | Sbjct 111335 CCTCTTCCCAATCCAGTACCATGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCAT 111394 Query 125054 TTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGAC 125113 |||||||| || ||| |||| ||| ||| ||| || | || |||| || | ||| Sbjct 111395 CTGGACGGTGGAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGCAACGC---TGAA 111451 Query 125114 TGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 || ||||| | || || ||| | | |||||||| |||||| ||| || || Sbjct 111452 CGACGGGGAGCGGCACTTCATCAAGCATGTGCTTGCCTTCTTCGCCGGCAGCGACGGCAT 111511 Query 125174 CGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233 |||| ||| ||||| | || ||| || ||| | ||||||| | || | Sbjct 111512 AGTCATCGAGAATCTTGCGCAGCGCTTCATGAGCGACGTGAAGGTGCCAGAGGCG-CGCG 111570 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || ||||| ||||| | ||||| |||||| | |||||||| | ||||||| ||| Sbjct 111571 CGTTCTACGGGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCTGC 111630 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACACG 125351 | |||| |||||| | || | || | | || | ||| | |||| || | ||| Sbjct 111631 TGGACACGTACAT-CACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATACAGACG 111689 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCG--ATGACGACAAGT 125409 | |||| || | || ||||| | |||| | |||||||||| | | | || Sbjct 111690 ATCCCGTGCATCCAGAAGAAGGCGGAGTGGGCCGTGCGGTGGATCGGGAGCAGCGCGAGC 111749 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC-GGGT 125468 ||| || | ||| | | || ||||| || |||||||| |||||||| |||| Sbjct 111750 TTTCAGGAGCGG-----CTGATCGGCTTTGCCGCGGTGGAGGGCATTTTCTTTTCCGGGT 111804 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 ||| |||| | | || ||||| ||||||||||| || ||||| || |||||| ||| Sbjct 111805 CGTTCTGCGCGC-TGTTCTGGCTGAAGAAGCGCGGTCTGATGCCAGGGCTGACGTTCAGC 111863 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGC 125588 |||||| | || || || |||||||| |||||| ||||| | ||| | ||| | | Sbjct 111864 AACGAGCTCATCTCGCGCGACGAGGGTCTACACACGGACTTCG-CATGC--CTGCTGTAC 111920 Query 125589 AACT---ATCTGCGTCCCGAG-TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAAC 125644 |||| | | | | || ||| | | |||| | || || |||||| Sbjct 111921 AACTCGCACATCAAGCACAAGCTGCCGCGCGAGCG-CGTGCTGGAGAT---CATTGT--- 111973 Query 125645 CGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGG 125704 ||||| |||| || || | ||||| | ||| | || ||||| | ||||||| Sbjct 111974 GGATGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATTGG 112033 Query 125705 CATGAACTGCAAGCTAATGTGCG-AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACG 125763 ||||||| |||| ||| ||| ||||||| ||||| || || || || || ||| | Sbjct 112034 CATGAACGCGGAGCTGATG-GCGCAGTACATCGAGTTCGTCGCGGACCGGCTGCTG---G 112089 Query 125764 AGTTGATTGGC---CGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCA 125820 || | | ||| ||| ||| || | | | | || || ||||||||| | | Sbjct 112090 TGTCGCTCGGCGAGGAGAAGCACTACCACTCGACGCAGCCGTTCGATTTCATGGAGATGA 112149 Query 125821 TATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || || |||| || || ||||| |||||||||| ||| | |||||| Sbjct 112150 TCTCGCTGCAGGGCAAAACGAACTTCTTCGAGAAGAGGGTGGGGGAGTAC 112199 >seq55 Length=202884 Score = 143 bits (158), Expect = 4e-29 Identities = 388/584 (66%), Gaps = 16/584 (3%) Strand=Plus/Minus Query 124994 CCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 ||| || || ||| ||| |||||||| ||| | |||||| || || || | | Sbjct 180666 CCTCTTCCCAATCCAGTACCATGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCAT 180607 Query 125054 TTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGAC 125113 |||||||| || ||| |||| ||| ||| ||| || | || |||| || | ||| Sbjct 180606 CTGGACGGTGGAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGCAACGC---TGAA 180550 Query 125114 TGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 || ||||| | || || ||| | | |||||||| |||||| ||| || || Sbjct 180549 CGACGGGGAGCGGCACTTCATCAAGCATGTGCTTGCCTTCTTCGCCGGCAGCGACGGCAT 180490 Query 125174 CGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233 |||| ||| ||||| | || ||| || ||| | ||||||| | || | Sbjct 180489 AGTCATCGAGAATCTTGCGCAGCGCTTCATGAGCGACGTGAAGGTGCCAGAGGCG-CGCG 180431 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || ||||| ||||| | ||||| |||||| | |||||||| | ||||||| ||| Sbjct 180430 CGTTCTACGGGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCTGC 180371 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACACG 125351 | |||| |||||| | || | || | | || | ||| | |||| || | ||| Sbjct 180370 TGGACACGTACAT-CACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATACAGACG 180312 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCG--ATGACGACAAGT 125409 | |||| || | || ||||| | |||| | |||||||||| | | | || Sbjct 180311 ATCCCGTGCATCCAGAAGAAGGCGGAGTGGGCCGTGCGGTGGATCGGGAGCAGTGCGAGC 180252 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC-GGGT 125468 ||| || | ||| | | || ||||| || |||||||| || ||||| |||| Sbjct 180251 TTTCAGGAGCGG-----CTGATCGGCTTTGCCGCGGTGGAGGGCATTTTTTTTTCCGGGT 180197 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 ||| |||| | | || ||||| ||||||||||| || ||||| || |||||| ||| Sbjct 180196 CGTTCTGCGCGC-TGTTCTGGCTGAAGAAGCGCGGTCTGATGCCAGGGCTGACGTTCAGC 180138 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||||| | || || || |||||||| |||||| ||||| || Sbjct 180137 AACGAGCTCATCTCGCGCGACGAGGGTCTACACACGGACTTCGC 180094 >seq2 Length=1059033 Score = 132 bits (146), Expect = 7e-26 Identities = 319/476 (67%), Gaps = 10/476 (2%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||| ||| || ||||| | |||||||| | || || |||||||| ||| Sbjct 329183 CAGGGTGGCGGTAAGCGCAAGGGCGCCTTTGCCGTCTATCTCGAGCCCTGGCACGCCGAC 329242 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAA---AACTCTGGCTTTGAAGAGGCACGAGCCAGG 96992 || |||| |||| | | ||| ||| ||| | || || || || ||| | Sbjct 329243 GTCTTTGGCTTTCT---GCTGCTGAAACGCAACACGGGAAAAGATGACCAGCGCGCCCGC 329299 Query 96993 GACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGC 97052 ||| | || ||||| || ||| | |||||| |||| |||| ||| || || || || Sbjct 329300 GACCTCTTCTATGCGCTGTGGATCCCAGATCTGTTTATGAGGCGTGTGAAAAGCGAGGGG 329359 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 | |||| || ||| ||| || ||| || || || |||||||| || || ||| Sbjct 329360 AAGTGGACGCTGATGGATCCCAACACGTGCCCGGGCCTCAGCGATTGCTATGGTGAGGAG 329419 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGA-GACGAGTCGATGC 97171 |||||| ||| | ||||||| |||||||| ||| | ||||| || | || Sbjct 329420 TTTGAGCGGCTCTACGAGCGCTACGAGTCCGAGGGCCGCGGCGTCAAGACGA-TCCAGGC 329478 Query 97172 ACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | || ||||| |||||| || | | ||| | ||||| || |||| ||| || Sbjct 329479 CCAGGAGGTGTGGTTTGCCATCCTGGAGTCGCAGATCGAGACGGGCGGGCCGTTCATCCT 329538 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCA-ACGCCACTTGGGCACCATCAAGGGCT 97290 ||||||||| | || |||| ||||| | | ||| ||||| |||||| ||| Sbjct 329539 CTACAAGGACGCATGCAACAGCAAGTCGAACCAGAAGAATCTT-GGCACGATCAAGTGCT 329597 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 | || || |||||||| ||||| |||||| | || ||| | |||||||| || ||| Sbjct 329598 CGAACCTATGCACGGAGATTGTCGAGTACACGTCGCCGCAGGAGACGGCGGTGTGC 329653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741054642485920