Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq27 89.7 5e-13 seq15 84.2 2e-11 seq93 82.4 7e-11 seq31 82.4 7e-11 >seq27 Length=379527 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| || || ||||| || | ||| || || | ||| | Sbjct 501 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCC 442 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| | ||||| | | ||||| ||||| || || || || ||| Sbjct 441 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTG 382 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | || || ||||| ||| ||| ||||| || || || || || | || ||| Sbjct 381 TCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTC-GCTCGGCTCCACCTCCAGCGCGAT 323 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || ||||| ||||||||||||| Sbjct 322 CGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGC 285 >seq15 Length=500758 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 ||| || || | || |||| ||||| ||||| || || ||||| || | ||| || || Sbjct 224177 CACGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTC 224118 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | ||| | ||||||||||| || ||| | ||||| | | ||||| || || Sbjct 224117 CGAGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGG 224058 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-T 94955 || || || || ||||| | || || ||||| || ||| ||||| || || | Sbjct 224057 CGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTC-GCTCGGCT 223999 Query 94956 CGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | || || | || ||| ||||| || || || || ||||| |||||||||||| Sbjct 223998 CCACCTCCAGCGCGATCGTTTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 223946 >seq93 Length=67426 Score = 82.4 bits (90), Expect = 7e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 115617 GGTGAGGATCGAACTCACAACCTTGGCATTATAAGTACCACGCGCTGCCGATTGCGCTAC 115676 |||||||||||||||||| ||||||| ||||| || |||||||||||||| |||||||| Sbjct 10308 GGTGAGGATCGAACTCACGACCTTGGGATTATGAGACCCACGCGCTGCCGACTGCGCTAC 10367 >seq31 Length=346146 Score = 82.4 bits (90), Expect = 7e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 115609 TTGCTCCAGGTGAGGATCGAACTCACAACCTTGGCATTATAAGTACCACGCGCTGCCGAT 115668 |||| | |||||||||||||||||| ||||||| ||||| || |||||||||||||| Sbjct 171604 TTGCGACCGGTGAGGATCGAACTCACGACCTTGGGATTATGAGACCCACGCGCTGCCGAC 171545 Query 115669 TGCGCTAC 115676 |||||||| Sbjct 171544 TGCGCTAC 171537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448288443009120