Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 210 6e-49 >seq2 Length=1059033 Score = 210 bits (232), Expect = 6e-49 Identities = 588/887 (66%), Gaps = 34/887 (4%) Strand=Plus/Plus Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 ||||| || || || ||||| ||||| |||||||||||| | || || || || | ||| Sbjct 328808 ATTGTGGAGCGTCCACAGCAGATGTTCATGCGTGTTGCTCTCGGCATTCACGGCGCAGAT 328867 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCT----TCTAAGTGCTCGTGTATTCACGCACGC 363557 | | || | ||| || || | || || ||| ||| | ||||| ||||| Sbjct 328868 CTCAAGAACGTGCGTGAGACGTACGACCTCATGTCCAAGGGCT----TCTTCACCCACGC 328923 Query 363558 CACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCT 363617 ||| || || | | || || || || | || || || ||| || ||||| || | Sbjct 328924 CACCCCGACCCTCTTTAACGCCGGCACCCCGAAGCCGCAAATGAGCTCGTGCTTCCTGGT 328983 Query 363618 AAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTAT 363677 |||||| || |||||| || |||| ||||| || ||| | || || | || Sbjct 328984 GGCGTCGAAGGAAGACAGCATCGACGGCATCTACGACACGCTGAAGGAGTGCGCGGTGAT 329043 Query 363678 TTCCAAGAATGCAGGCGGAATTGG--TGTATCGATCCACAATGTTCGTGCACAGAACAGT 363735 ||| || ||||| ||||| || | || | ||||| | || || | ||| Sbjct 329044 CAGCAAAGCGGCCGGCGGTATTGGCCTGCA-CG-TGCACAACATCCGCGCGGCGGGCAGC 329101 Query 363736 TACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGAC 363795 || || || || || ||||| ||||| || || ||||| || || || || Sbjct 329102 TATATAGCTGGTACGAACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAAC 329161 Query 363796 AATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTAT 363855 || || || | ||||| ||||||||||| || |||||||| || || ||||| | ||| Sbjct 329162 AACACCGCCCGCTACGTGGACCAGGGTGGCGGTAAGCGCAAGGGCGCCTTTGCCGTCTAT 329221 Query 363856 CTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA---AACACGGGA 363912 |||||||| || ||||| | |||| ||||| ||| | |||| ||||||||| Sbjct 329222 CTCGAGCCCTGGCACGCCGACGTCTTTGGCTTTCT---GCTGCTGAAACGCAACACGGGA 329278 Query 363913 AAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATG 363972 ||||| || ||| || || || || |||||||| || ||| | | || | |||||| Sbjct 329279 AAAGATGACCAGCGCGCCCGCGACCTCTTCTATGCGCTGTGGATCCCAGATCTGTTTATG 329338 Query 363973 AAGCGCGTG--GAGGCAGGTAAGAATTGGTCACTCTT--TTGCCCACACGAATGTCCAGG 364028 | ||| ||| || ||| ||| ||| | || | | || ||||| || || || Sbjct 329339 AGGCGTGTGAAAAGCGAGG--GGAAGTGGACGCTGATGGATCCCAACACG--TGCCCGGG 329394 Query 364029 TCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGG 364088 || |||| | ||||| || | || || ||||| || || || ||||| Sbjct 329395 CCTCAGCGATTGCTATGGTGAGGAGTTTGAGCGGCTCTACGAGCGCTACGAGTCCGAGGG 329454 Query 364089 AAAGGCTCGT-AAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGA 364147 | ||| ||||| || | || ||| || | |||||||||||| |||| ||||||| Sbjct 329455 -CCGCGGCGTCAAGACGATCCAGGCCCAGGAGGTGTGGTTTGCCATCCTGGAGTCGCAGA 329513 Query 364148 TTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGC 364207 | ||||| || || | || | ||||| || | |||||| ||||||| |||||| Sbjct 329514 TCGAGACGGGCGGGCCGTTCATCCTCTACAAGGACGCATGCAACAGCAAGTCGAACCAGA 329573 Query 364208 AGCACCTTGGTACAATTCAGCAGAGC---AACCTATGTACCGAGATTATTGAATACACCG 364264 || | ||||| || | ||| || || |||||||| || |||||| | || ||||| Sbjct 329574 AGAATCTTGGCACGA-TCA--AGTGCTCGAACCTATGCACGGAGATTGTCGAGTACACGT 329630 Query 364265 CTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCG 364311 | || | ||||| || || || ||||| || || || ||||| ||| Sbjct 329631 CGCCGCAGGAGACGGCGGTGTGCAACCTCGCCTCCATTGCGCTGCCG 329677 Score = 86.0 bits (94), Expect = 2e-11 Identities = 279/430 (65%), Gaps = 10/430 (2%) Strand=Plus/Plus Query 364732 CGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAAC 364791 ||||||||||| | || |||||||| || || || || | ||||| ||||| ||| Sbjct 330110 CGCAACTCCCTGCTGGTTGCCCCCATGCCAACCGCGTCCACCTCGCAGATTCTCGGCAAC 330169 Query 364792 AACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAA 364851 |||||||||||||| || || || || | || ||||| || || ||| || Sbjct 330170 AACGAGTGCTTCGAGCCCTTCACCTCGAACATCTACGTCCGCCGCGTGCTGAGCGGCGAG 330229 Query 364852 TTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGAC 364911 || || || || || |||||||| |||| ||| || || || || || ||| || Sbjct 330230 TTCCCTGTTGTGAACAAGTACCTCGTCATGGACCTCATCGCGCGTGGTCTATGGAACGAG 330289 Query 364912 AGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCA 364971 ||| |||| | |||||| | ||||| ||| | | ||| || | || Sbjct 330290 TCGATGCGGAACGAGATCATCTCTTACAATGGCTCTATCCTCGCTATTAACGGCATGCCG 330349 Query 364972 GAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGAT 365031 || || |||| | ||||| ||||| ||||| ||| | ||| | || || ||| Sbjct 330350 GACGACCTGAGGGAGCTTTACCGGACCGTGTGGGAGATTCCACAGCGCAAGCTGATAGAT 330409 Query 365032 ATGGCGGCCGATCGCG----GTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCAT 365087 ||||| ||| |||| || | || | | ||| |||||| | ||| | ||| | Sbjct 330410 ATGGCACGCGACCGCGGCCAGTACATTGACCAGTC----GCAGTCGCTGAACCTCTTCCT 330465 Query 365088 GACTCAG-CCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTC 365146 | || || ||||||| | || | || ||||||| ||||| ||| | |||| | Sbjct 330466 -CCAGAGCCCCACCTCCGGCCAGATCACGTCCATGCTCTTCTATTCCTGGGAGGCCGGGC 330524 Query 365147 TTAAGACAGG 365156 | ||||| || Sbjct 330525 TGAAGACTGG 330534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303345383984744