Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2 304 1e-77 seq76 168 6e-37 seq55 163 3e-35 seq15 111 1e-19 seq27 104 2e-17 seq7 89.7 5e-13 >seq2 Length=1059033 Score = 304 bits (336), Expect = 1e-77 Identities = 954/1452 (66%), Gaps = 37/1452 (3%) Strand=Plus/Minus Query 145051 GTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGT 145110 ||||| || || || | ||||||||| || ||| || || | || | ||| || || Sbjct 330250 GTACTTGTTCACAACAGGGAACTCGCCGCTCAGCACGCGGCGGACGTAGATGTTCGAGGT 330191 Query 145111 GAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTA 145170 |||||| || || ||||||| ||||| || || || | ||| | ||||| |||||| Sbjct 330190 GAAGGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGG 330131 Query 145171 CGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCA 145230 || |||| | || ||||||| ||| || | | | | ||||| || | |||| Sbjct 330130 GGCAACCAGCAGGGAGTTGCGCATGCCCACCTGCATCACCTTCTCCTTGAGGCTGGCCCA 330071 Query 145231 ATCCCATAG--CGAAGTCGG-CCTCACGTCC---CACATGTCGTACTGCAAAATGCCCTC 145284 ||||| | || || || || | | | | ||||||||| |||||| ||||||||| Sbjct 330070 GTCCCAGCGACCGCTGTTGGGCCGCGCATTCTTCCACATGTCGAACTGCAGAATGCCCTC 330011 Query 145285 GCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACT 145344 |||||| |||||||| |||| ||| |||| || || ||||| || | Sbjct 330010 GCTGGCCGGGCTGCCCGTGAAGGTCTCGTACGGGCCCTCCTCCTTCGCCAGCTC-CATCG 329952 Query 145345 -CGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTT 145403 || ||| | || | || || || || ||| || | | ||| | | || ||| | Sbjct 329951 ACGACTCGACCGCAGCAAAGTAGATCGTTTCGAAGATCTCCGCGTTCACCCGCTGCGCCT 329892 Query 145404 CATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCA 145463 | | | |||||| |||| || | || || || ||||||||||| | || | Sbjct 329891 CCGCCGAGACAAACGGCAGCCGCATGAGGATGAAGGCGTCCGCGAGCCCCTGCACGCCGA 329832 Query 145464 CGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTAC 145523 ||||||||| || | |||||| || | ||||| ||||| || || || | Sbjct 329831 GGCCGATGGGGCGGTTGCGCATGTTACTGCGGCGCGCCGTCTCGACCGGGTAGTAGTTGC 329772 Query 145524 GGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAA---TGTGCCGCAACTTTT 145580 |||| |||| || | ||| || | |||||| | ||| | | || | Sbjct 329771 GGTCAATAACGCGGTTGAGGTTGCGTGTGATCTGCTTTGTCACGGTGTAGAGAAGCTGGT 329712 Query 145581 CAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAAT 145640 ||| || || || |||||| | || ||| | || || || || | | Sbjct 329711 GGT--TCAGCTCGCGCTTC-TCAACGTCGACGAAGCGCGGCAGCGCAATGGAGGCGAGGT 329655 Query 145641 TACAAACTGCCGTCTCCT-CGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTA 145699 | || || |||||||||| ||||| || |||| | || ||||| | ||| | || Sbjct 329654 TGCACACCGCCGTCTCCTGCGGCGACG-TGTACTCGACAATCTCCGTGCATAGGTTCGAG 329596 Query 145700 CATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGC 145759 || ||||| || || ||||| | ||| || || |||||||| |||||||||||||| Sbjct 329595 CACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCATGCGTCCTTGTAGAGG 329536 Query 145760 ATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATA--AAACGGTGCAAGTCCTGCG 145817 ||| |||| ||||| ||||| | ||||| ||||| ||| |||| || ||||| | Sbjct 329535 ATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATGGCAAACCA--CACCTCCTGGG 329478 Query 145818 CACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACG 145877 | | | | || | ||||||||| ||||| | ||||||| ||||||| Sbjct 329477 CCTGGATCGTCTTGACGCCGCGGCCCTCGGACTCGTAGCGCTCGTAGAGCCGCTCAAACT 329418 Query 145878 CGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGC 145937 | ||| ||||||||| ||||| || ||| |||||||| |||||||| ||| | Sbjct 329417 CCTCACCATAGCAATCGCTGAGGCCCGGGCACGTGTTGGGATCCATCAGCGTCCACTTCC 329358 Query 145938 CGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC 145997 | | | || || ||| |||||||| |||||| | ||||||||| || | | ||||| Sbjct 329357 CCTCGCTTTTCACACGCCTCATAAACAGATCTGGGATCCACAGCGCATAGAAGAGGTCGC 329298 Query 145998 G--CGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTC 146055 | ||| || || || ||| |||| || |||| || | | | ||| ||| Sbjct 329297 GGGCGCGCTGG--TCATCTTTTCCCGTGTTGCGTTTCAGCAGCAGAAAGCCAAAGACGTC 329240 Query 146056 CGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCTGGTC 146112 |||||||| || || | ||||||||| | ||| || || || || |||||||||||| Sbjct 329239 GGCGTGCCAGGGCTCGAGATAGACGGCAAAGGCGCCCTTGCGCTTACCGCCACCCTGGTC 329180 Query 146113 CACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCC 146172 ||||| || | ||||||| |||||||| | ||| ||| ||| ||| | | ||| Sbjct 329179 CACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTTCGACGTGCC 329120 Query 146173 GTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACC 146232 ||||||| ||| | |||| | ||| | | || || | || ||| | ||| Sbjct 329119 GTTCGTACCAGCTATATAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCAGGCCAATACC 329060 Query 146233 GCC-GCCGTACTTGGAT-ATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATG 146290 ||| |||| ||| | | || | ||||| || ||||| |||||||||||||| ||| Sbjct 329059 GCCGGCCG--CTTTGCTGATCACCGCGCACTCCTTCAGCGTGTCGTAGATGCCGTCGATG 329002 Query 146291 CTATC--GCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCG 146348 || || ||||| | ||| | ||| |||||||||| ||| |||| | |||| || || | Sbjct 329001 CTGTCTTCCTTCG-ACGCC-ACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGGTGCCGG 328944 Query 146349 CCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTT 146408 | || | |||||| | ||||| || || | | ||| | ||||| | Sbjct 328943 CGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTGGACATGAGGTCGTACGTCT 328884 Query 146409 CGATAGCG-TCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGT 146467 | || ||||| | || |||| |||||||| | ||| || ||||||| ||| || Sbjct 328883 CACGCACGTTCTTG-AGATCTGCGCCGTGAATGCCGAGAGCAACACGCATGAACATCTGC 328825 Query 146468 TGGGGCCGCTCC 146479 || || |||||| Sbjct 328824 TGTGGACGCTCC 328813 >seq76 Length=120750 Score = 168 bits (186), Expect = 6e-37 Identities = 358/518 (69%), Gaps = 15/518 (3%) Strand=Plus/Plus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143 || |||||| | | ||||| | || ||||| || ||||||| |||||| ||| Sbjct 111690 ATCCCGTGCATCCAGAAGAAGGCGGAGTGGGCCGTGCGGTGGATCGGGAGCAGC---GCG 111746 Query 46144 A-CTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCA- 46201 | ||||| ||||| || | | |||||| ||||||||| | || ||||| || Sbjct 111747 AGCTTTCAG-GAGCGGCTGATCGGCTTTGCCGCGGTGGAGGGCATTTTCTTTTCCGGGTC 111805 Query 46202 GTTTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGC 46260 ||| ||| || | || | | || || | || | | ||||| || |||||||| ||| Sbjct 111806 GTTCTGC-GCGCTGTTCTGGCTGAAGAAGCGCGGTC-TGATGCCAGGGCTGACGTTCAGC 111863 Query 46261 AACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAAC 46320 |||||||| || |||||||||||||| || || |||||||| || || || || ||| Sbjct 111864 AACGAGCTCATCTCGCGCGACGAGGGTCTACACACGGACTTCGCATGCCTGCTGTACAAC 111923 Query 46321 ACTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTG 46380 | | | | | ||||||| ||| ||| ||||||| || | ||| |||||| Sbjct 111924 TCGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTGGAGATCATTGTGGATGCGGTG 111983 Query 46381 GCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGC-CCTGCTGGGCATGAACGC 46439 ||| ||| ||||| | | ||| ||| ||| ||| ||| | ||||||||||| Sbjct 111984 AACATCGAGCGCGAGTTCATCTGCGACGCGCTG-CCGGTGCGGCTGATTGGCATGAACGC 112042 Query 46440 ACAGTCAATGTGCG-ACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACC 46498 || ||| ||| | ||||||||||| || |||||||| ||||| ||| ||| | Sbjct 112043 GGAGCTGATG-GCGCAGTACATCGAGTTCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCG 112101 Query 46499 AGCCGAAGCATTTTCACGCG-CGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAG 46557 || |||||| | ||| || ||| | || || || || ||| | | ||||| ||| || Sbjct 112102 AGGAGAAGCACTACCACTCGACGC-AGCCGTTCGATTTCATGGAGATGATCTCGCTGCAG 112160 Query 46558 GGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 |||||||| || || ||||| ||| | || || ||||| Sbjct 112161 GGCAAAACGAACTTCTTCGAGAAGAGGGTGGGGGAGTA 112198 >seq55 Length=202884 Score = 163 bits (180), Expect = 3e-35 Identities = 357/518 (69%), Gaps = 15/518 (3%) Strand=Plus/Minus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143 || |||||| | | ||||| | || ||||| || ||||||| ||||| ||| Sbjct 180311 ATCCCGTGCATCCAGAAGAAGGCGGAGTGGGCCGTGCGGTGGATCGGGAGCAGT---GCG 180255 Query 46144 A-CTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCA- 46201 | ||||| ||||| || | | |||||| ||||||||| | |||||||| || Sbjct 180254 AGCTTTCAG-GAGCGGCTGATCGGCTTTGCCGCGGTGGAGGGCATTTTTTTTTCCGGGTC 180196 Query 46202 GTTTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGC 46260 ||| ||| || | || | | || || | || | | ||||| || |||||||| ||| Sbjct 180195 GTTCTGC-GCGCTGTTCTGGCTGAAGAAGCGCGGTC-TGATGCCAGGGCTGACGTTCAGC 180138 Query 46261 AACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAAC 46320 |||||||| || |||||||||||||| || || |||||||| || || || || ||| Sbjct 180137 AACGAGCTCATCTCGCGCGACGAGGGTCTACACACGGACTTCGCATGCCTGCTGTACAAC 180078 Query 46321 ACTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTG 46380 | | | | | ||||||| ||| ||| ||||||| || | ||| |||||| Sbjct 180077 TCGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTGGAGATTATTGTGGATGCGGTG 180018 Query 46381 GCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCC-CTGCTGGGCATGAACGC 46439 ||| ||| ||||| | | ||| ||||| | ||| ||| | ||||||||||| Sbjct 180017 AACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGG-TGCGGCTGATTGGCATGAACGC 179959 Query 46440 ACAGTCAATGTGCG-ACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACC 46498 ||| ||| ||| | ||||||||||| || |||||||| ||||| ||| ||| | Sbjct 179958 GGAGTTGATG-GCGCAGTACATCGAGTTCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCG 179900 Query 46499 AGCCGAAGCATTTTCACGCG-CGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAG 46557 || |||||| | ||| || ||| | || || || || ||| | | ||||| ||| || Sbjct 179899 AGGAGAAGCACTACCACTCGACGC-AGCCGTTCGAATTCATGGAGATGATCTCGCTGCAG 179841 Query 46558 GGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 |||||||| || || ||||| | | || || ||||| Sbjct 179840 GGCAAAACAAACTTCTTCGAGAGGAAGGTGGGGGAGTA 179803 >seq15 Length=500758 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| |||||||| | || | || |||||||| || |||||||| || Sbjct 224174 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGA 224115 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| ||||| ||||||||||| ||| |||| | |||||||||||||| || Sbjct 224114 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGG 224055 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||| | | ||| | || ||| | | ||| | Sbjct 224054 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCGGCTCCAC 223995 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | | | ||||| ||||| || || || ||||| ||||||||| Sbjct 223994 CTCCAGCGCGATCGTTTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 223946 >seq27 Length=379527 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 |||| ||||||| |||||||| | || | || |||||||| || |||||||| || Sbjct 515 AGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCG 456 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||| ||||| ||||||||||| ||| |||| | ||||||||||| || | Sbjct 455 AGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGCG 396 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| || || ||||| ||| || ||| | | ||| | || ||| | | ||| | Sbjct 395 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCA 336 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | | | || || ||||| || || || ||||| ||||||||| Sbjct 335 CCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 286 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| || |||||||| || | ||||| |||||| ||||||||||| Sbjct 6 GTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCG 65 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||| |||| | ||||||||||||||| ||||| || || ||||| Sbjct 66 GCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 109 >seq7 Length=654660 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| |||||||| | || | || |||||||| || |||||||| | Sbjct 521 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTACGAG 462 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||| | || ||| ||||||||||| ||| |||| | |||||||||||| ||| Sbjct 461 AGGGTGAGGCCGTACTCCAGCTGCTTGCCGGCGAAGATCAGGGGCTGCTGGTCCGCCGGG 402 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | ||| | || ||| | | ||| | Sbjct 401 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACC 342 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | | | || || ||||| || || || ||||| |||||||| Sbjct 341 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472009897121280