Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq15 116 3e-21 seq7 114 1e-20 seq27 107 2e-18 >seq15 Length=500758 Score = 116 bits (128), Expect = 3e-21 Identities = 169/237 (71%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||||||||||||||| || ||||||||||| | Sbjct 224173 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 224114 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| || ||||| || | || || ||||| |||||| || Sbjct 224113 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 224054 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || |||||| | | | ||||||| |||||| Sbjct 224053 ATGCCCTCCTTGTCCTGGATCTTGGC--CTTCACATTCTCGATCGTGTCGCTCGGCTCCA 223996 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTAGC 16943 |||| | ||| ||||| ||||||||||| || || || |||||||| ||| || Sbjct 223995 CCTCCAGCGCGATCGTTTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGGTGTGGC 223939 >seq7 Length=654660 Score = 114 bits (126), Expect = 1e-20 Identities = 167/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | ||| |||| ||||||||||||||||| || |||||||||| | Sbjct 522 CCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTACGA 463 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| | ||| ||||| || ||||| || | || || |||| |||||| | || Sbjct 462 GAGGGTGAGGCCGTACTCCAGCTGCTTGCCGGCGAAGATCAGGGGCTGCTGGTCCGCCGG 403 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| ||||| || || || |||||| | | | ||||||| |||||| Sbjct 402 GATGCCCTCCTTGTCCTGGATCTTGGC--CTTCACGTTCTCGATCGTGTCGCTCGGCTCC 345 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| | ||| || || ||||||||||| || || || ||||||||| || Sbjct 344 ACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATTGTG 291 >seq27 Length=379527 Score = 107 bits (118), Expect = 2e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 16706 TACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCG 16765 || || || || || | ||| |||| ||||||||||||||||| || ||||||||||| Sbjct 516 TAGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCC 457 Query 16766 GCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACA 16825 | | || | | ||||||| || ||||| || | || || ||||| ||||| Sbjct 456 GAGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGC 397 Query 16826 GGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT 16883 || | |||||| ||||| || || || |||||| | | | ||||||| |||| Sbjct 396 GGGATGCCCTCCTTGTCCTGGATCTTGGC--CTTCACGTTCTCGATCGTGTCGCTCGGCT 339 Query 16884 CCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || |||| | ||| || || ||||||||||| || || || |||||||| Sbjct 338 CCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 287 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/186 (72%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 16734 GCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTT 16793 |||||||||||||||| || ||||||||||| | | || | ||||||||| || | Sbjct 1 GCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAGCTGCT 60 Query 16794 TGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTTG 16851 |||| || | || || ||||| |||||| || | |||||| ||||| || || | Sbjct 61 TGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGG 120 Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911 | |||||| | | | ||||||| |||||| |||| | ||| || || ||||| Sbjct 121 C--CTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATCGTCTTGCCGGT 178 Query 16912 CAGCGT 16917 |||||| Sbjct 179 CAGCGT 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405085570991080