Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq32 104 3e-17 seq2 98.7 1e-15 seq245 93.3 5e-14 >seq32 Length=321325 Score = 104 bits (114), Expect = 3e-17 Identities = 178/258 (69%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 15352 GGAAGTCATGTATTCGGGCTTTACCGGCGAAAGGATCCAAAGCACCATATTTATGGGACC 15411 ||| ||| | |||||||| | || ||||| || || || | | || | || || Sbjct 1397 GGATGTCTTTTATTCGGGAATCACGGGCGAGTTAATGCAGGGCTACGTCTTCTTTGGGCC 1338 Query 15412 GACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCGCGATCGCACGG 15471 | ||||| || || || || |||||||| | |||||||||||||| || ||| ||| Sbjct 1337 CATCTACTACCAGCGCCTTAAGCACATGGTCACAGACAAGATGCACGCCCGCTCGACCGG 1278 Query 15472 ACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGCGGTGGCCTCCG 15531 | | ||| |||| ||||||||| | | ||||| || | | ||||| ||||| Sbjct 1277 GCCACGGTCGATGCTCACTCGCCAGCCAACCGAGGGTCGGTCTCGCAGTGGTGGTCTCCG 1218 Query 15532 CTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAATTCCTCAACGA 15591 | |||| |||||||| |||||||| | | ||||||| || | |||||||||| Sbjct 1217 CGTTGGTGAGATGGAGCGCGACTGCATGGTTGGCTACGGCGCGTCCAACCTCCTCAACGA 1158 Query 15592 GCGCATGTTTCTCAACAG 15609 |||| |||||| ||| Sbjct 1157 GCGC---CTTCTCATCAG 1143 >seq2 Length=1059033 Score = 98.7 bits (108), Expect = 1e-15 Identities = 145/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 126180 GGTGTAAATGTAGCGGGGAGCTGCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACTG 126239 |||| | ||||||||| || || |||||||| || | || ||||| || ||||| Sbjct 888882 GGTGAAGATGTAGCGGCCCGCGGCGTGGTCCTTGCCACCGTGCAGACGCGTACCGAACTG 888823 Query 126240 ACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGAC 126299 ||| ||| || || | | || |||||| ||||||||||||||||| | ||| Sbjct 888822 ACCATCCTTGCGCAGCAGCGGGACGTTGTTGCTGCCCACAAAGTCCTGCGCCATTCCGAC 888763 Query 126300 AATGGTCTCGCAC-AGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGC 126358 || |||| |||| || |||||||||||| | ||| ||| ||||| | ||||||| Sbjct 888762 GATCGTCT-GCACGAGCGACTGCTCGCCGTGGTGGTACGCGGAGTGCTCCGAGACGTAGC 888704 Query 126359 CGCTCAGCTGCGCAACCTTGATA 126381 | |||||| | ||||||||| Sbjct 888703 CAGCAAGCTGCACCACCTTGATA 888681 >seq245 Length=3395 Score = 93.3 bits (102), Expect = 5e-14 Identities = 109/142 (77%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 15056 ATTGGCGACAAGTTTTGCT-CTGGTATGGCGCAAAAGGGCACGTGCGGCATGATTTTCCC 15114 || ||||||||||||||| | || | || ||||||||||| |||||| || | Sbjct 2896 ATCGGCGACAAGTTTTGCAGCCGGCACGGA-CAAAAGGGCACCAACGGCATCCAGTTTCG 2954 Query 15115 CCAGGAAGACATGCCCTT-TACCGCGTCAGGCATGACGCCCGACATTATCATCAACCCCA 15173 |||||| ||||||||||| |||||| | ||||| ||| ||| | |||||||||||| Sbjct 2955 CCAGGAGGACATGCCCTTCAACCGCGAC-GGCATCGTGCCGGACCTCATCATCAACCCCC 3013 Query 15174 ACTGCATCCCGTCCCGCATGAC 15195 || ||| || ||||||||||| Sbjct 3014 ACGCCATTCCCTCCCGCATGAC 3035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611388239939200