Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 105 6e-18 seq15 98.7 8e-16 seq27 89.7 4e-13 >seq2 Length=1059033 Score = 105 bits (116), Expect = 6e-18 Identities = 237/353 (67%), Gaps = 11/353 (3%) Strand=Plus/Minus Query 130025 TCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCG----CGCTTTTCTATCC 130080 ||||||||| ||| || | |||||| || || || | || || |||| || ||| Sbjct 329339 TCATAAACAGATCTGGGATCCACAGCGCATAGAAGAGGTCGCGGGCGCGCTGGTC-ATCT 329281 Query 130081 TCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCA 130140 | ||| |||| |||||||| || || | | | |||||||||||| || || Sbjct 329280 TTT---CCCGTGTTGCGTTTCAGCAGCAGAAAGCCAAAGACGTCGGCGTGCCAGGGCTCG 329224 Query 130141 ACATAAATTGCCATTGCGCCCTTCCGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCA 130197 | ||| | || | |||||||| || || ||| || ||||| |||| ||| ||| Sbjct 329223 AGATAGACGGCAAAGGCGCCCTTGCGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTG 329164 Query 130198 TTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATG 130257 |||||| |||| || | ||||| | | | ||||| | ||||||||| || | | || Sbjct 329163 TTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTATA 329104 Query 130258 AAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGAT 130317 | ||||| || || | ||| || ||| || || || |||||| | ||| Sbjct 329103 TAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCAGGCCAATACCGCCGGCCGCTTTGCTG 329044 Query 130318 ATCAACGCGCAATCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTT 130370 |||| |||||| || ||||| || || ||||| |||| |||||||| || Sbjct 329043 ATCACCGCGCACTCCTTCAGCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTT 328991 >seq15 Length=500758 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| |||||| || | || || ||||| | | | Sbjct 223947 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAAACGATCGCGCTGGAGGTGGAGCCGAGC 224006 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || || || ||||||||||| || || || || || Sbjct 224007 GACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 224066 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| |||||| |||| || |||||| Sbjct 224067 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAAC 224126 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | || | || |||| ||||||| || Sbjct 224127 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 224173 >seq27 Length=379527 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || ||| || | || || ||||| | | | Sbjct 287 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 346 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || || ||||||||||| || || || || || Sbjct 347 GACACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAG 406 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| |||||| |||| || |||||| Sbjct 407 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAAC 466 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | || | || |||| ||||||| || Sbjct 467 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 513 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || || || || || ||||| || || |||||||| Sbjct 118 AAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGTCTGATCTTCGCCGGCAAG 59 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | ||||| |||||| |||| || |||||||| || || || ||||| Sbjct 58 CAGCTGGAGGACGGCCGCACGCTCTCGGACTACAACATCCAGAAGGAGTCCAC 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725483205980