Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq76 125 1e-23 seq2 105 1e-17 >seq76 Length=120750 Score = 125 bits (138), Expect = 1e-23 Identities = 553/857 (65%), Gaps = 30/857 (4%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||||||| ||| ||||| | ||||||||| ||||| || | || Sbjct 112180 TCGAAGAAGTTCGTTTTGCCCTGCAGCGAGATCATCTCCATGAAATCGAACGGCTGCGTC 112121 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | | ||| ||||| | ||| || | || | | ||||| || || ||||| | Sbjct 112120 GAGTGGTAGTGCTTCTCCTCGCCGAGCGACACCAGCAGCCGGTCCGCGACGAACTCGATG 112061 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||||| || | |||||||||||||| || || | || || |||||| Sbjct 112060 TACTGCGCCATCAGCTCCGCGTTCATGCCAATCAGCCGCACCGGCAGCGCGTCGCAGATG 112001 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || ||| | | || || ||| | | | | |||| Sbjct 112000 AACTCGCGCTCGATGTTCACCGCATCCACAATGATCTCCAGCACGCGCTCGCGCGGCAGC 111941 Query 251803 TTGTTCTCCAGCTTTGA---GTACAGGA-GCTCGCCAA-ACTGTTGGTGCAGACCCTCGT 251857 |||| || | | || |||||| | || || || | || ||| |||||||||| Sbjct 111940 TTGTGCTTGATGTGCGAGTTGTACAGCAGGCATGCGAAGTCCGT--GTGTAGACCCTCGT 111883 Query 251858 CGCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 |||| ||||| ||||||| | || | ||| || ||||||| || || ||| | || Sbjct 111882 CGCGCGAGATGAGCTCGTTG--CTGAACGTCAGCCCTGGCATCAGACCGCGCTTCTTCAG 111825 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATG-CAA 251974 |||||| | ||||| || || || || || | | ||||| || | | | | | | | Sbjct 111824 CCAGAACAGCGCGCAGAACGACCCGGAAAAGAAAATGCCCTCCAC-CGCGGCAAAGCCGA 111766 Query 251975 CAAGGCGCTCAGCAAACGACTTGTCCTGCGAC--AAGAACTTCTGTGCCCATGCTGCCTT 252032 || ||||| ||| || | |||| | | || | ||||| | ||||| Sbjct 111765 TCAGCCGCTCCTGAAA--GCTCGCGCTGCTCCCGATCCACCGCACGGCCCACTCCGCCTT 111708 Query 252033 CTT-TCCAACCGCGGG---GATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCAT 252088 ||| | | | |||| | ||| ||| |||| || || ||| |||| Sbjct 111707 CTTCTGGATGCACGGGATCGTCTGTATCGCGTGCAGCAGCCGCAG-CTTCTCCTCG---C 111652 Query 252089 CGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGA 252148 |||| |||| || || ||||| | ||||||| ||||||| |||||| || | | Sbjct 111651 TGTCCGTGATGTACGTGTCCAGCAGCACAGAGTACGTCTCCGAGTGGATGTTCTCCATCA 111592 Query 252149 ACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGT 252208 || |||| | | ||||| ||||| || | | || || | ||| | Sbjct 111591 TCAGCTGGAACCCGTAGAACGCGCGCGCCTCTGGCACCTTCACGTCGCTCATGAAGCGCT 111532 Query 252209 TTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGA 252268 |||| ||||| || || ||||| |||||||| || |||||| |||| | ||||| Sbjct 111531 GCGCAAGATTCTCGATGACTATGCCGTCGCTGCCGGCGAAGAAGGCAAGCACATGCTTGA 111472 Query 252269 TGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAG 252328 ||||||| ||||| ||||||| ||| | | |||||| ||||| | ||| Sbjct 111471 TGAAGTGCCGCTCCCCGTCGTTCAGCGTTGC---CCAGTCCTTCATGTCGTTGCCCAGGT 111415 Query 252329 GAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCG-AACACATCA 252387 | || ||||||||||||| | | || || ||||||| ||||| | | ||| Sbjct 111414 CGATCTCCTCCACCGTCCAGATGCAGCTCTCCTGCTCCTTGTAC-TTGCGCCAGATGTCA 111356 Query 252388 GGGTACTTGATTGGGAA 252404 |||||| ||||||||| Sbjct 111355 TGGTACTGGATTGGGAA 111339 >seq2 Length=1059033 Score = 105 bits (116), Expect = 1e-17 Identities = 216/318 (68%), Gaps = 20/318 (6%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTC----TCGCGGTATGATGTGGAGCGTTCTAT 218573 ||||| | ||||||||||| ||||| ||| |||| | || ||||| || Sbjct 888547 GACTTTGTGGACAAGGAGCTGATTCTCTTCTCCATCGCCGACTG----CGAGCGCAGCAT 888602 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 || |||||| | || ||| ||||||| ||||| |||||||| || || ||||| Sbjct 888603 CCCGAGCGTGATTGACGGCTTCAAGCCCGGCCAGCGCAAGATCCTGTTCTCCTGCTTCAA 888662 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 ||| ||| |||| | || ||||| | ||| || |||| || || || || || Sbjct 888663 GCGCAACTTGGTGAACTCTATCAAGGTGGTGCAGCTTGCTGGCTACGTCTCGGAGCACTC 888722 Query 218694 TGGCTACCATCACGGTGAGCAGAGTC---TGCAGGGTGCCATTGTAGGCATGGCACAGGA 218750 | ||||| ||||| |||||| | ||||| | || || || ||||| ||||| Sbjct 888723 CGCGTACCACCACGGCGAGCAGTCGCTCGTGCAG---ACGATCGTCGGAATGGCGCAGGA 888779 Query 218751 CTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCA---ACGGTCAGTTTGGTTCTCG 218807 || ||||||||| |||||| | | |||||| | || | |||||||| ||| | || Sbjct 888780 CTTTGTGGGCAGCAACAACGT---CCCGCTGCTGCGCAAGGATGGTCAGTTCGGTACGCG 888836 Query 218808 TCTATTGGGTGGAAAGGA 218825 ||| ||||| ||||| Sbjct 888837 TCTGCACGGTGGCAAGGA 888854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027830320773772