Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq76 174 3e-38 seq55 165 2e-35 seq27 165 2e-35 seq15 161 2e-34 seq7 141 2e-28 seq2 125 1e-23 seq26 87.8 3e-12 seq12 87.8 3e-12 seq8 87.8 3e-12 seq3 87.8 3e-12 >seq76 Length=120750 Score = 174 bits (192), Expect = 3e-38 Identities = 307/443 (69%), Gaps = 11/443 (2%) Strand=Plus/Minus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 |||| ||||| ||||||||||||||| |||| |||||||||||| | ||||||| Sbjct 112218 TCATCACGCCGGCCTTCTGGTACTCCCCCACCCTCTTCTCGAAGAAGTTCGTTTTGCCCT 112159 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 || || || | ||||||||| || || || | | | | | ||||| | | Sbjct 112158 GCAGCGAGATCATCTCCATGAAATCGAACGGCTGCGTCGAGTGGTAGTGCTTCTCCTCGC 112099 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 |||| | | | ||||| || ||||||||||||||||| |||||| |||| || Sbjct 112098 CGAGCGACACCAGCAGCCGGTCCGCGACGAACTCGATGTACTGCGCCATCAGCTCCGCGT 112039 Query 10114 TCATGCCAATCATGCGGCAGGGGATG-GCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 |||||||||||| || ||| || | |||||||| ||||| || ||| || ||| Sbjct 112038 TCATGCCAATCA-GCCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACC 111980 Query 10173 GCTTCCTCGACGATGCTCTTTACCACG---TCAAGGGACAGCTTGTTCTCGAGCTTCGAA 10229 || ||| || ||| ||| | |||| || | | |||||||| || || | ||| Sbjct 111979 GCATCC---ACAATGATCTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAG 111923 Query 10230 T---ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTG 10286 | |||| || | | || | | ||| || ||||||||||| ||||| ||||||| Sbjct 111922 TTGTACAGCAGGCATGCGAAGTCCGTGTGTAGACCCTCGTCGCGCGAGATGAGCTCGTTG 111863 Query 10287 GACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGAC 10346 || ||| || ||||| || || || || ||||||||| | |||||||||||| Sbjct 111862 CTGAACGTCAGCCCTGGCATCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGAC 111803 Query 10347 CCGGAGAACAGAAGACCCTCCAC 10369 ||||| || | || |||||||| Sbjct 111802 CCGGAAAAGAAAATGCCCTCCAC 111780 >seq55 Length=202884 Score = 165 bits (182), Expect = 2e-35 Identities = 305/443 (69%), Gaps = 11/443 (2%) Strand=Plus/Plus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 |||| ||||| ||||||||||||||| ||| | |||||||||||| | ||||||| Sbjct 179783 TCATCACGCCGGCCTTCTGGTACTCCCCCACCTTCCTCTCGAAGAAGTTTGTTTTGCCCT 179842 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 || || || | ||||||||| || || || | | | | | ||||| | | Sbjct 179843 GCAGCGAGATCATCTCCATGAATTCGAACGGCTGCGTCGAGTGGTAGTGCTTCTCCTCGC 179902 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 |||| | | | ||||| || ||||||||||||||||| ||||| |||| || Sbjct 179903 CGAGCGACACCAGCAGCCGGTCCGCGACGAACTCGATGTACTGCGCCATCAACTCCGCGT 179962 Query 10114 TCATGCCAATCATGCGGCAGGGGATG-GCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 |||||||||||| || ||| || | |||||||| ||||| || ||| || ||| Sbjct 179963 TCATGCCAATCA-GCCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACC 180021 Query 10173 GCTTCCTCGACGATGCTCTTTACCACG---TCAAGGGACAGCTTGTTCTCGAGCTTCGAA 10229 || ||| || || ||| | |||| || | | |||||||| || || | ||| Sbjct 180022 GCATCC---ACAATAATCTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAG 180078 Query 10230 T---ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTG 10286 | |||| || | | || | | ||| || ||||||||||| ||||| ||||||| Sbjct 180079 TTGTACAGCAGGCATGCGAAGTCCGTGTGTAGACCCTCGTCGCGCGAGATGAGCTCGTTG 180138 Query 10287 GACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGAC 10346 || ||| || ||||| || || || || ||||||||| | |||||||||||| Sbjct 180139 CTGAACGTCAGCCCTGGCATCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGAC 180198 Query 10347 CCGGAGAACAGAAGACCCTCCAC 10369 ||||| || | || |||||||| Sbjct 180199 CCGGAAAAAAAAATGCCCTCCAC 180221 >seq27 Length=379527 Score = 165 bits (182), Expect = 2e-35 Identities = 179/235 (76%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 ||||| || ||||| ||||||| |||| ||| ||||||||||| || |||||||| || Sbjct 520 TTAATAGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTA 461 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 || ||||| || | || || || | |||||| |||||||| || || | || ||||| Sbjct 460 GTCCGAGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 401 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-G 68406 || || ||||| |||||||| || ||||| ||||| ||| |||||| ||||| ||| | Sbjct 400 TGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTC-GCTCG 342 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||| | ||| || || || || || ||||| ||||| |||||||| Sbjct 341 GCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 287 Score = 120 bits (132), Expect = 6e-22 Identities = 139/185 (75%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 68262 AGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTC 68321 ||||||||||| || |||||||| || || ||||| || | || || || | |||||| Sbjct 3 AGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAGCTGCTTG 62 Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 |||||||| || || | || ||||| || || ||||| |||||||| || ||||| ||| Sbjct 63 CCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCC 122 Query 68382 TTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || ||| |||||| ||||| ||| | || || |||| | ||| || || || || || Sbjct 123 TTCACGTTCTCGATCGTGTC-GCTCGGCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAG 181 Query 68441 GGTCT 68445 |||| Sbjct 182 CGTCT 186 Score = 84.2 bits (92), Expect = 4e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| |||| ||| ||||||||||| || |||||||| || || ||| Sbjct 285 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 226 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAG 68335 || || | || || || | |||||| |||||||| || || Sbjct 225 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAG 185 >seq15 Length=500758 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| |||| ||| ||||||||||| || |||||||| || || ||| Sbjct 224173 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 224114 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || ||||| || || Sbjct 224113 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 224054 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| ||||| || |||||| ||||| ||| | || || Sbjct 224053 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTC-GCTCGGCTCCAC 223995 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| | ||| ||||| || || || ||||| ||||| |||||||| Sbjct 223994 CTCCAGCGCGATCGTTTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 223947 >seq7 Length=654660 Score = 141 bits (156), Expect = 2e-28 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| |||| ||| ||||||||||| || |||||||| || | ||| Sbjct 521 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTACGAG 462 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || | || | |||||| |||||||| || || || ||||| | || Sbjct 461 AGGGTGAGGCCGTACTCCAGCTGCTTGCCGGCGAAGATCAGGGGCTGCTGGTCCGCCGGG 402 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| ||||| ||| |||||| ||||| ||| | || || Sbjct 401 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTC-GCTCGGCTCCAC 343 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 |||| | ||| || || || || || ||||| ||||| ||||||||| || Sbjct 342 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATTGTG 291 >seq2 Length=1059033 Score = 125 bits (138), Expect = 1e-23 Identities = 305/457 (67%), Gaps = 4/457 (1%) Strand=Plus/Minus Query 31701 CACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATTGCTGCCC 31760 ||||||||||| || | || || ||||| ||||||||||| | || || || || | Sbjct 329652 CACACCGCCGTCTCCTGCGGCGACGTGTACTCGACAATCTCCGTGCATAGGTTCGAGCAC 329593 Query 31761 GTGATGGTGCCGGCATTGGACTGCATGTTCTTCACGTT-CACGCTGTCCTTGTTGAGCAC 31819 |||| ||||| ||| ||| | ||| ||| || || |||||||| ||| | Sbjct 329592 TTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCATGC-GTCCTTGTAGAGGAT 329534 Query 31820 GTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGCTTT 31879 | | ||| ||||||||||||||||| | || ||| ||| || || | || | Sbjct 329533 GAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATGGCAAACCACACCTCCTGGGCCTG 329474 Query 31880 GA-CGACTTTCTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTACTCCT 31938 || || ||| | | || ||||||||||||||||| || || ||| |||||| Sbjct 329473 GATCGTCTTGACGC-CGCGGCCCTCGGACTCGTAGCGCTCGTAGAGCCGCTCAAACTCCT 329415 Query 31939 TGCCAAAGGCATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCATGCGACAT 31998 ||| || |||| | || || || ||| ||||| || | |||| ||| | | Sbjct 329414 CACCATAGCAATCGCTGAGGCCCGGGCACGTGTTGGGATCCATCAGCGTCCACTTCCCCT 329355 Query 31999 CGGCCTCTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAAACAGATTCCTGG 32058 || | || ||| |||| ||||| || | ||||| ||| || || || | | || Sbjct 329354 CGCTTTTCACACGCCTCATAAACAGATCTGGGATCCACAGCGCATAGAAGAGGTCGCGGG 329295 Query 32059 CGCGTTGGGTCTCCTCACCCTGGTTACGTCGGAGCAGCAGGAAGTCCATGATGTCGGGGT 32118 |||| ||| || | ||| ||| ||| |||||||| ||| | | || ||||| || Sbjct 329294 CGCGCTGGTCATCTTTTCCCGTGTTGCGTTTCAGCAGCAGAAAGCCAAAGACGTCGGCGT 329235 Query 32119 GGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCG 32155 | ||||||||| || ||||| || | |||||||| Sbjct 329234 GCCAGGGCTCGAGATAGACGGCAAAGGCGCCCTTGCG 329198 Score = 91.5 bits (100), Expect = 3e-13 Identities = 304/473 (64%), Gaps = 0/473 (0%) Strand=Plus/Minus Query 176025 ATGAGGCGCTTCACATTGTCTACGATATCCTTGGGGTTGTAAGCCGGAATGTTAGTGCTA 176084 |||||||||| | ||| | ||| ||| |||||||| ||| ||| | ||||| Sbjct 889097 ATGAGGCGCTCGAGGTTGCTGATGATCTCCAGCGGGTTGTAGTTCGGGATGCTTGTGCTG 889038 Query 176085 AATCCTGTTCCTATTCCTGACGATCCATTCACCAGGAGAAACGGGATGGTGGGAACATAG 176144 || || || || || || | || || |||||||| | | ||||||| |||| ||| Sbjct 889037 AACCCGGTGCCGATGCCCGTCGTGCCGTTCACCAGCACCATCGGGATGACCGGAATGTAG 888978 Query 176145 TATTCCGGTTCAATCCGGTCGCCGTCATCCTCGAGGTAGTTCAGCAGACGCTCGTCGGCC 176204 | || || | | | ||||| || || ||| | | || | ||||||||| Sbjct 888977 AAGAAAGGCTCCACCGAGAGACCGTCGTCGTCCTTGTACTCGACCACAAAGTCGTCGGCC 888918 Query 176205 TTGTGGAAAATATCCCGGGTGTTGGGGGACAGTTGTGTGAAGATATACCTAGCAGACGCA 176264 ||| || || |||||| | | || | |||||||| || | | | || Sbjct 888917 GGGTGAAAGATGGCCCGGGCGACCTGCATGAGCCGGGTGAAGATGTAGCGGCCCGCGGCG 888858 Query 176265 CTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAGAAGCAAATTGATG 176324 ||||||||| ||||| || || | |||||| || || | |||| || | Sbjct 888857 TGGTCCTTGCCACCGTGCAGACGCGTACCGAACTGACCATCCTTGCGCAGCAGCGGGACG 888798 Query 176325 TTATTCGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCGCCCTGGAGAGACGCCTCG 176384 || || ||||| |||| || ||||||||||| || | | ||| ||| |||| Sbjct 888797 TTGTTGCTGCCCACAAAGTCCTGCGCCATTCCGACGATCGTCTGCACGAGCGACTGCTCG 888738 Query 176385 CCGTGGTGATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACTGCGCGACTTTGATTTCT 176444 |||||||| || ||| || ||| ||| || |||| |||| | || ||||| Sbjct 888737 CCGTGGTGGTACGCGGAGTGCTCCGAGACGTAGCCAGCAAGCTGCACCACCTTGATAGAG 888678 Query 176445 TGTACGAGGTTGCGCTTCAACGCCGAGAACAGAATCTTCCGCTGCGAGGGCTT 176497 | || | ||||||||| || |||||||| ||||| ||||| |||||| Sbjct 888677 TTCACCAAGTTGCGCTTGAAGCAGGAGAACAGGATCTTGCGCTGGCCGGGCTT 888625 >seq26 Length=391819 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 128546 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 128489 >seq12 Length=538685 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 40980 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 40923 >seq8 Length=653392 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 210034 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 209977 >seq3 Length=945995 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 706021 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 706078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921616732022240