Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2 329 6e-85 seq76 288 2e-72 seq55 260 3e-64 >seq2 Length=1059033 Score = 329 bits (364), Expect = 6e-85 Identities = 974/1473 (66%), Gaps = 49/1473 (3%) Strand=Plus/Minus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 ||||| |||| ||||| || | | ||||| |||||||| || || | |||| Sbjct 330324 GAGCCATTGTAAGAGATGATCTCGTTCCGCATCGACTCGTTCCATAGACC-ACGCGCGAT 330266 Query 244070 -AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTG 244128 || || ||| |||| | ||||||| || | ||||| || |||||||||||| Sbjct 330265 GAGGTCCATGACGAGGTACTTGTTCACAACAGGGAACTCGCCGCTCAGCACGCGGCGGAC 330206 Query 244129 GTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCT 244188 ||||| ||| | ||| ||||||| || ||| ||||||| || ||||||| ||| Sbjct 330205 GTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGCGAGGTGGA 330146 Query 244189 CGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATG-CGGA 244247 ||| || |||||||| | |||||||| ||| | || ||| | ||| || | Sbjct 330145 CGCGGTTGGCATGGGGGCAACCAGCAGGGAGTTGCGCATGCC---CACCTGCATCACCTT 330089 Query 244248 GTC--TGAGCTCGTTCCAGTCCCACATGCCCGAGA-GGTCCTCGCGTTTGAGGCCCCACA 244304 || |||| | ||||||||| || | || || ||| || ||||| Sbjct 330088 CTCCTTGAGGCTGGCCCAGTCCCAGCGACCGCTGTTGGGCCGCGCATTCTT----CCACA 330033 Query 244305 TGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGT 244364 |||| |||||||| | |||| |||| | ||||||||| | ||||| ||| || || | Sbjct 330032 TGTCGAACTGCAGAATGCCCTCGCTGGCCGGGCTGCCCGTGAAGGTCTCGTACGGGCCCT 329973 Query 244365 CGCGCTGGGCCAGCTTACAGCT-CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATC 244423 | || ||||||| || | | |||| || || ||||||| || ||||||||| Sbjct 329972 CCTCCTTCGCCAGCTC-CATCGACGACTCGACCGCAGCAAAGTAGATCGTTTCGAAGATC 329914 Query 244424 ATCTTGTTCATGTCGCGG-GCCTT-GCCGCAGGTGAAGGGGATGCCCATCATCATGAAGA 244481 | ||||| ||| | |||| |||| || || || | | ||| | |||||| Sbjct 329913 TCCGCGTTCACC-CGCTGCGCCTCCGCCG-AGACAAACGGCAGCCGCATGAGGATGAAGG 329856 Query 244482 CGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG-CATG 244540 |||| || || ||||||||||||| ||||||||| | || ||| |||| ||| | | Sbjct 329855 CGTCCGCGAGCCCCTGCACGCCGAGGCCGATGGGGCGGTTGCGCATGTTACTGCGGCGCG 329796 Query 244541 GCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATG 244600 | || | || ||||| |||||| ||| || || |||||||||||| |||||| || Sbjct 329795 CCGTCTCG-ACCGGGTAGTAGTTGCGGTCAATAACGCGGTTGAGGTTGCGTGTGATC-TG 329738 Query 244601 CG--GACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGA 244658 | | | ||| | || ||||| || || | || |||| || | | | Sbjct 329737 CTTTGTC-ACGGTGTAGAGAAGCTG---GTGGTTC----AG-----CTCG-CGCTTCTCA 329692 Query 244659 TCCTC-ACAAACTCGTTG-AGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGA 244716 | || || || || | || || | | ||| |||||||| || ||| ||||| || Sbjct 329691 ACGTCGACGAAG-CGCGGCAGCGCAATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGG 329633 Query 244717 GTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTG 244776 ||||||| ||||||||| ||||| ||||| ||||||||| ||||| || | || Sbjct 329632 CGACGTGTACTCGACAATCTCCGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTT 329573 Query 244777 GTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAG 244836 || || |||||| |||||| |||||||||||||| ||||| ||||| || ||||||| Sbjct 329572 CTGGTTCGACTTGCTGTTGCATGCGTCCTTGTAGAGGATGAACGGCCCGCCCGTCTCGAT 329513 Query 244837 CTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCC 244896 ||| | | |||| | ||| | ||| |||| || |||| || | ||| Sbjct 329512 CTGCGACTCCAGGATGGCAAACCACACCTCCTGGGCCTGGATCGTCTTGACGCCGCGGCC 329453 Query 244897 CTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCC 244956 ||| | ||||||||| ||| || ||| ||||| || || ||| ||||| Sbjct 329452 CTCGGACTCGTAGCGCTCGTAGAGCCGCTCAAACTCCTCACCATAGCAATCGCTGAGGCC 329393 Query 244957 GGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAA 245016 ||||||| || ||| || |||||| || || || || | | ||| || Sbjct 329392 CGGGCACGTGTTGGGATCCATCAGCGTCCACTTCCCCTCGCTTTTCACACGCCTCATAAA 329333 Query 245017 GAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGT 245076 || || |||||||| || || | ||||||||| | || | ||| || || || || Sbjct 329332 CAGATCTGGGATCCACAGCGCATAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGT 329273 Query 245077 GTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGC 245136 ||| ||||| || |||| ||||||||||| ||||||||||||| | ||||| || Sbjct 329272 GTTGCGTTTCAGCAGCAGAAAGCCAAAGACGTCGGCGTGCCAGGGCTCGAGATAGACGGC 329213 Query 245137 GAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGA 245192 | |||||| ||||| ||| |||||||||| | | || ||| ||||| Sbjct 329212 AAAGGCGCCCTTGCGCTTACCGCCACCCTGGTCCA----CGTAGCGGGCGGTGTTGTTGA 329157 Query 245193 AGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGC 245252 ||| ||| || | ||||| | ||||| || |||||| || || || ||| || Sbjct 329156 AGACGCGTAGCATTGGCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTATATAGCTGC 329097 Query 245253 CCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGG 245312 || | | || |||| | | || ||| | |||||||| ||| ||| | | Sbjct 329096 CCGCCGCGCGGATGTTGTGCACGTGCAGGCCAATACCGCCGGCCGCTTTGCTGATCACCG 329037 Query 245313 CGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAA 245372 |||| ||| | ||||| ||||| || |||||||| |||| | ||| | Sbjct 329036 CGCACTCCTTCAGCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGCCACCAGGA 328977 Query 245373 AGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGG 245432 |||| ||| || || ||||| ||| ||| | ||| || || || ||| ||||||||| Sbjct 328976 AGCACGAGCTCATTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGG 328917 Query 245433 TAAAGTAGCGGCTCGAGAGGAACCCGTACGTCT 245465 | ||| ||| | || | || ||||||||| Sbjct 328916 TGAAGAAGCCCTTGGACATGAGGTCGTACGTCT 328884 >seq76 Length=120750 Score = 288 bits (318), Expect = 2e-72 Identities = 592/867 (68%), Gaps = 15/867 (2%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || |||| ||||||||| || ||||||| || | || || || |||||| | Sbjct 111345 ATCCAGTACCATGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTG 111404 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAG 42404 |||||||| ||||||| ||| |||| | | ||||| | ||| || || | Sbjct 111405 GAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGCAACGCTGAACGACGGGGAGCGG 111464 Query 42405 TTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAAC 42464 ||| |||| | | || ||||||||||||| | ||||||||||||| ||||| Sbjct 111465 CACTTCATCAAGCATGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATAGTCATCGAGAAT 111524 Query 42465 CTGGC-CACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 || || || | | ||||||| || ||| || ||||||||| |||||||| || Sbjct 111525 CTTGCGCAGC-GCTTCATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTT 111583 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACAT 42583 |||| | || |||||| | ||||| ||| |||| | ||||| |||||||||| Sbjct 111584 CCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCTGCTGGACACGTACAT 111643 Query 42584 CCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAA 42643 | ||| || ||| ||||| | | || || ||||||| || |||||| | Sbjct 111644 CACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATACAGACGATCCCGTGCATCCA 111703 Query 42644 GAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAG 42703 |||||||||||| ||||| | ||||||| ||| || || | | ||| | ||| | Sbjct 111704 GAAGAAGGCGGAGTGGGCCGTGCGGTGGATCGGGAGCAGCG-CG-AGCTTTCAG-GAGCG 111760 Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763 |||| | | |||| |||| || |||||||| ||||| || || | ||| | | | || Sbjct 111761 GCTGATCGGCTTTGCCGCGGTGGAGGGCATTTTCTTTTCCGGGTCGTTCTGCGCGCTGTT 111820 Query 42764 CTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 |||||| ||| || ||| | |||||| || || || ||| ||||| |||||| Sbjct 111821 CTGGCTGAAGAAGCGCGGTCT-GATGCCAGGGCTGACGTTCAGCAACGAGCTCATCTCGC 111879 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGT---TCTCGAGCCACCTCAGGC 42879 | |||||||| || || | |||||| || ||||| |||| |||| ||| ||| || Sbjct 111880 GCGACGAGGGTCTACACACGGACTTCGCATGCCTGCTGTACAACTCG---CACATCAAGC 111936 Query 42880 ACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGG 42939 |||||| || ||||| || | || ||||| ||| || ||| | |||||| | Sbjct 111937 ACAAGCTGCCGCGCGAGCGCGTGCTGGAGATCATTGTGGATGCGGTGAACATCGAGCGCG 111996 Query 42940 AGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCA 42999 ||||| || | ||||||| ||| ||| | ||||||||| || || ||| Sbjct 111997 AGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCATGAACGCGGAGCTGATGGCGC 112056 Query 43000 AGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTAC 43058 |||||||| ||| |||||| |||| || || ||| | || || | | |||| Sbjct 112057 AGTACATCGAGTTCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAG-CACTAC 112115 Query 43059 AACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTT 43118 || || || || ||||| || ||||||| |||||| || ||||||| || ||||| Sbjct 112116 CACTCGACGCAGCCGTTCGATTTCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTC 112175 Query 43119 TTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||| | || | || |||||| Sbjct 112176 TTCGAGAAGAGGGTGGGGGAGTACCAG 112202 >seq55 Length=202884 Score = 260 bits (288), Expect = 3e-64 Identities = 573/847 (68%), Gaps = 15/847 (2%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || |||| ||||||||| || ||||||| || | || || || |||||| | Sbjct 180656 ATCCAGTACCATGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTG 180597 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAG 42404 |||||||| ||||||| ||| |||| | | ||||| | ||| || || | Sbjct 180596 GAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGCAACGCTGAACGACGGGGAGCGG 180537 Query 42405 TTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAAC 42464 ||| |||| | | || ||||||||||||| | ||||||||||||| ||||| Sbjct 180536 CACTTCATCAAGCATGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATAGTCATCGAGAAT 180477 Query 42465 CTGGC-CACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 || || || | | ||||||| || ||| || ||||||||| |||||||| || Sbjct 180476 CTTGCGCAGC-GCTTCATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTT 180418 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACAT 42583 |||| | || |||||| | ||||| ||| |||| | ||||| |||||||||| Sbjct 180417 CCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCTGCTGGACACGTACAT 180358 Query 42584 CCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAA 42643 | ||| || ||| ||||| | | || || ||||||| || |||||| | Sbjct 180357 CACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATACAGACGATCCCGTGCATCCA 180298 Query 42644 GAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAG 42703 |||||||||||| ||||| | ||||||| ||| | | | | ||| | ||| | Sbjct 180297 GAAGAAGGCGGAGTGGGCCGTGCGGTGGATCGGGAG--CAGTGCGAGCTTTCAG-GAGCG 180241 Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763 |||| | | |||| |||| || |||||||| || || || || | ||| | | | || Sbjct 180240 GCTGATCGGCTTTGCCGCGGTGGAGGGCATTTTTTTTTCCGGGTCGTTCTGCGCGCTGTT 180181 Query 42764 CTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 |||||| ||| || ||| | |||||| || || || ||| ||||| |||||| Sbjct 180180 CTGGCTGAAGAAGCGCGGTCT-GATGCCAGGGCTGACGTTCAGCAACGAGCTCATCTCGC 180122 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGT---TCTCGAGCCACCTCAGGC 42879 | |||||||| || || | |||||| || ||||| |||| |||| ||| ||| || Sbjct 180121 GCGACGAGGGTCTACACACGGACTTCGCATGCCTGCTGTACAACTCG---CACATCAAGC 180065 Query 42880 ACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGG 42939 |||||| || ||||| || | || || || ||| || ||| | |||||| | Sbjct 180064 ACAAGCTGCCGCGCGAGCGCGTGCTGGAGATTATTGTGGATGCGGTGAACATCGAGCGCG 180005 Query 42940 AGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCA 42999 ||||| || | ||||||| ||| ||| | ||||||||| || | ||| Sbjct 180004 AGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCATGAACGCGGAGTTGATGGCGC 179945 Query 43000 AGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTAC 43058 |||||||| ||| |||||| |||| || || ||| | || || | | |||| Sbjct 179944 AGTACATCGAGTTCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAG-CACTAC 179886 Query 43059 AACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTT 43118 || || || || ||||| || ||||||| |||||| || ||||||| || ||||| Sbjct 179885 CACTCGACGCAGCCGTTCGAATTCATGGAGATGATCTCGCTGCAGGGCAAAACAAACTTC 179826 Query 43119 TTCGAGA 43125 ||||||| Sbjct 179825 TTCGAGA 179819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944333392313920