Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq76 111 3e-19 seq55 98.7 2e-15 >seq76 Length=120750 Score = 111 bits (122), Expect = 3e-19 Identities = 293/442 (66%), Gaps = 9/442 (2%) Strand=Plus/Plus Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 243378 || || || ||| | ||||||||| |||||||| | || |||||| ||| ||| Sbjct 111780 GTGGAGGGCATTTTCTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGT 111839 Query 243379 GTGATGCCTGGCCT--CGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACC 243436 ||||||| || || || || | |||||| ||||| ||||||||||| || ||| Sbjct 111840 CTGATGCCAGGGCTGACGTTCAGC--AACGAGCTCATCTCGCGCGACGAGGGTCTACACA 111897 Query 243437 AACAGTTCGGTGAGCTTATGTAT---TCAAAGCTCCAGAACAAGCTACCATTCGAAACGG 243493 | |||| || |||| || | || || ||||||| || ||| | Sbjct 111898 CGGACTTCGCATGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCG 111957 Query 243494 TCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTC 243553 | | ||||| || || || | | ||| || ||||| |||||||| | | Sbjct 111958 TGCTGGAGATCATTGTGGATGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGC 112017 Query 243554 CATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCG 243613 | ||||| |||||||||||| | || || |||| ||||||||||| ||||| || | Sbjct 112018 CGGTGCGGCTGATTGGCATGAACGCGGAGCTGATGGCGCAGTACATCGAGTTCGTCGCGG 112077 Query 243614 ACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCT 243673 |||| | | | |||| || | ||||| ||| |||| | | | || || | | Sbjct 112078 ACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTACCACTCGACGCAGCCGTTCGATT 112137 Query 243674 TTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATT 243733 | |||||| | || ||||| || || ||||| ||||||||||| ||| | || | || | Sbjct 112138 TCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTCTTCGAGAAGAGGGTGGGGGAGT 112197 Query 243734 ATCA-ACGCCCTGGTGTGATGA 243754 | || | | || || ||||||| Sbjct 112198 ACCAGAAGGCC-GGCGTGATGA 112218 >seq55 Length=202884 Score = 98.7 bits (108), Expect = 2e-15 Identities = 265/403 (66%), Gaps = 7/403 (2%) Strand=Plus/Minus Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 243378 || || || ||| | ||||||||| |||||||| | || |||||| ||| ||| Sbjct 180221 GTGGAGGGCATTTTTTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGT 180162 Query 243379 GTGATGCCTGGCCT--CGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACC 243436 ||||||| || || || || | |||||| ||||| ||||||||||| || ||| Sbjct 180161 CTGATGCCAGGGCTGACGTTCAGC--AACGAGCTCATCTCGCGCGACGAGGGTCTACACA 180104 Query 243437 AACAGTTCGGTGAGCTTATGTAT---TCAAAGCTCCAGAACAAGCTACCATTCGAAACGG 243493 | |||| || |||| || | || || ||||||| || ||| | Sbjct 180103 CGGACTTCGCATGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCG 180044 Query 243494 TCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTC 243553 | | || || || || || | | ||| || ||||| |||||||| | | Sbjct 180043 TGCTGGAGATTATTGTGGATGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGC 179984 Query 243554 CATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCG 243613 | ||||| |||||||||||| | || | |||| ||||||||||| ||||| || | Sbjct 179983 CGGTGCGGCTGATTGGCATGAACGCGGAGTTGATGGCGCAGTACATCGAGTTCGTCGCGG 179924 Query 243614 ACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCT 243673 |||| | | | |||| || | ||||| ||| |||| | | | || || | | Sbjct 179923 ACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTACCACTCGACGCAGCCGTTCGAAT 179864 Query 243674 TTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGA 243716 | |||||| | || ||||| || || ||||| ||||||||||| Sbjct 179863 TCATGGAGATGATCTCGCTGCAGGGCAAAACAAACTTCTTCGA 179821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102873047720200