Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq27 107 2e-18 seq15 107 2e-18 seq7 95.1 1e-14 seq2 89.7 5e-13 >seq27 Length=379527 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | ||||| || || | ||| || || || || |||||||| || | | Sbjct 513 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 454 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || |||||||||||||| | || || ||||||||||| || || Sbjct 453 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGCGGG 394 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCAC 64395 || || || || || || || || ||| || ||| | || || | |||| ||||| Sbjct 393 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGC-TCCAC 335 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | ||||||||||||| || || ||||| || ||||| Sbjct 334 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 287 Score = 82.4 bits (90), Expect = 8e-11 Identities = 126/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 64246 CGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCC 64305 ||| || || || || |||||||| || | || ||||| |||| || ||||||||||| Sbjct 5 CGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAGCTGCTTGCC 64 Query 64306 GGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTT 64365 ||| | || || ||||||||||| || || || || || || || || || || ||| Sbjct 65 GGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 124 Query 64366 TACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCA 64421 || ||| | || || | |||| ||||| || | | | ||||||||||||| Sbjct 125 CACGTTCTCGATCGTGTCGCTCGGC-TCCACCTCCAGCGCGATCGTCTTGCCGGTCA 180 >seq15 Length=500758 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | ||||| || || | ||| || || || || |||||||| || | | Sbjct 224173 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 224114 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || |||||||||||||| | || || ||||||||||| || || Sbjct 224113 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 224054 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCAC 64395 || || || || || || || || ||| ||| ||| | || || | |||| ||||| Sbjct 224053 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCGGC-TCCAC 223995 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | || |||||||||| || || ||||| || ||||| Sbjct 223994 CTCCAGCGCGATCGTTTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 223947 >seq7 Length=654660 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | ||||| || || | ||| || || || || |||||||| | | | Sbjct 521 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTACGAG 462 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||| | ||| || |||||||||||||| | || || |||||||||| | || Sbjct 461 AGGGTGAGGCCGTACTCCAGCTGCTTGCCGGCGAAGATCAGGGGCTGCTGGTCCGCCGGG 402 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCAC 64395 || || || || || || || || ||| || ||| | || || | |||| ||||| Sbjct 401 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGC-TCCAC 343 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | | | ||||||||||||| || || ||||| || |||||| Sbjct 342 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATT 294 >seq2 Length=1059033 Score = 89.7 bits (98), Expect = 5e-13 Identities = 242/370 (65%), Gaps = 3/370 (1%) Strand=Plus/Minus Query 154912 TCATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAG 154971 ||||||||| ||| || | ||||| || || || | || || || | ||| || Sbjct 329339 TCATAAACAGATCTGGGATCCACAGCGCATAGAAGAGGTCGCGGGCGCGCTGGTCATCTT 329280 Query 154972 CGCCCATGTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAAT 155031 ||| |||| || || | || ||| || | | |||||||||||| ||||| | || Sbjct 329279 TTCCCGTGTTGCGTTTCAGCAGCAGAAAGCCAAAGACGTCGGCGTGCCAGGGCTCGAGAT 329220 Query 155032 ATACGGCCATCGCGCCTTTGCGTTT---TCCTCCTTGATCCACGTGACGCACACAATTAT 155088 | ||||| | ||||| ||||| || || || || ||||||| || | || | Sbjct 329219 AGACGGCAAAGGCGCCCTTGCGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGT 329160 Query 155089 TGTACACGCGCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCACGTATCGCGC 155148 || | ||||| | || ||| | | ||| | | ||||||||| || ||| ||| || Sbjct 329159 TGAAGACGCGTAGCATTGGCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTATATAGC 329100 Query 155149 TGCCGCGAGCACGCGCTTTATGAACATTAACGCCCAAACCTCCGCCGTATTTAGATATTT 155208 |||| || || || || || | | ||| | ||| ||| | ||| || Sbjct 329099 TGCCCGCCGCGCGGATGTTGTGCACGTGCAGGCCAATACCGCCGGCCGCTTTGCTGATCA 329040 Query 155209 GCGCACAGTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACA 155268 ||| || ||| || || ||||| || || | |||||||||||| ||| ||| || || Sbjct 329039 CCGCGCACTCCTTCAGCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGCCACCA 328980 Query 155269 AGAAACACGA 155278 ||| ||||| Sbjct 328979 GGAAGCACGA 328970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499641727184480