Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2 239 4e-58 >seq2 Length=1059033 Score = 239 bits (264), Expect = 4e-58 Identities = 510/753 (68%), Gaps = 14/753 (2%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 |||||||||||||| || ||||| || |||||| ||| || ||| ||||| |||||| Sbjct 328922 GCCACCCCGACCCTCTTTAACGCCGGCACCCCGAAGCCGCAAATGAGCTCGTGCTTCCTG 328981 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || || |||| ||| |||| ||| || | ||||| || ||||| || ||| Sbjct 328982 GTGGCGTCGAAGGAAGACAGCATCGACGGCATCTACGACACGCTGAAGGAGTGCGCGGTG 329041 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||| ||| || || || || || | || ||| || | || || ||| | Sbjct 329042 ATCAGCAAAGCGGCCGGCGGTATTGGCCTGCACGTGCACAACATCCGCGCGGCGGGCAGC 329101 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 || || ||||| || ||||| || ||||| ||||| || ||||| || ||||||||| Sbjct 329102 TATATAGCTGGTACGAACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAAC 329161 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | || |||||||||||||||||||| || | | | ||||| | || || |||||| Sbjct 329162 AACACCGCCCGCTACGTGGACCAGGGTGGCGGTAAGCGCAAGGGCGCCTTTGCCGTCTAT 329221 Query 94192 CTCGAGCCCTGGCACGCGGACGT-GCAGGCTTTCATCGACCTGC-GAAA-GAACCAC-GG 94247 ||||||||||||||||| ||||| ||||||| |||| |||| | | ||| || Sbjct 329222 CTCGAGCCCTGGCACGCCGACGTCTTTGGCTTTC----TGCTGCTGAAACGCAACACGGG 329277 Query 94248 CAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTAT 94307 || ||| || | ||| | ||||||||||| || || ||| | ||||| || ||||| Sbjct 329278 AAAAGATGACCAGCGCGCCCGCGACCTCTTCTATGCGCTGTGGATCCCAGATCTGTTTAT 329337 Query 94308 GAAACGCGTCGAGAAAAACTCCG---CCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGG 94364 | | |||| | ||||| | | |||| || | |||||| || || || Sbjct 329338 G--AGGCGT-GTGAAAAGCGAGGGGAAGTGGACGCTGATGGATCCCAACACGTGCCCGGG 329394 Query 94365 ACTGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG 94424 || ||| | ||| | ||||| | || | || ||||| || |||| Sbjct 329395 CCTCAGCGATTGCTATGGTGAGGAGTTTGAGCGGCTCTACGAGCGCTACGAGTCCGAGGG 329454 Query 94425 CAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGT 94484 | | | ||| || | || | || ||||| | ||| |||| ||| | Sbjct 329455 CCGCGGCGTCAAGACGATCCAGGCCCAGGAGGTGTGGTTTGCCATCCTGGAGTCGCAGAT 329514 Query 94485 GGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCA 94544 |||||||| ||| | |||| | | ||||||| | |||| |||||| |||||| | Sbjct 329515 CGAGACGGGCGGGCCGTTCATCCTCTACAAGGACGCATGCAACAGCAAGTCGAACCAGAA 329574 Query 94545 GCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCC 94604 | | || || ||||||| ||||||| || ||||| |||||||||||||| || || || Sbjct 329575 GAATCTTGGCACGATCAAGTGCTCGAACCTATGCACGGAGATTGTCGAGTACACGTCGCC 329634 Query 94605 GGACGAGATTGCTGTGTGTAACCTGGGCTCCAT 94637 | | |||| || ||||| ||||| | |||||| Sbjct 329635 GCAGGAGACGGCGGTGTGCAACCTCGCCTCCAT 329667 Score = 113 bits (124), Expect = 4e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 95089 AACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAAC 95148 ||| | ||||| || ||||||||||| || || ||||| ||||||| || ||||||||| Sbjct 330113 AACTCCCTGCTGGTTGCCCCCATGCCAACCGCGTCCACCTCGCAGATTCTCGGCAACAAC 330172 Query 95149 GAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTC 95208 |||| ||||| ||||||||||| ||| | ||| | | || ||||| ||| || ||| Sbjct 330173 GAGTGCTTCGAGCCCTTCACCTCGAACATCTACGTCCGCCGCGTGCTGAGCGGCGAGTTC 330232 Query 95209 CCCGTCATCAACAAGCACCTCCTACGGGACCT 95240 || || | |||||| ||||| | |||||| Sbjct 330233 CCTGTTGTGAACAAGTACCTCGTCATGGACCT 330264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494720157452320