Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2 352 3e-92 seq76 159 3e-34 seq55 154 1e-32 seq15 95.1 1e-14 seq27 86.0 6e-12 >seq2 Length=1059033 Score = 352 bits (390), Expect = 3e-92 Identities = 986/1475 (67%), Gaps = 51/1475 (3%) Strand=Plus/Minus Query 153006 ATGAGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTC 153065 |||||||| || | ||||| ||| || || | |||||||| || ||| || | Sbjct 330267 ATGAGGTCCATGACGAGGTACTTGTTCACAACAGGGAACTCGCCGCTCAGCACGCGGCGG 330208 Query 153066 AAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTG 153125 | || | || ||||| || || ||| | ||||| ||||| || || || | ||| Sbjct 330207 ACGTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGCGAGGTG 330148 Query 153126 GTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATGTC 153184 | ||||| |||||| || |||| || || || |||| ||| | || | || Sbjct 330147 GACGCGGTTGGCATGGGGGCAACCAGCAGGGAGTTGCGCATGCCCACCTGCATCACCTTC 330088 Query 153185 GTCCTTCAACGCCTG--CCAATCCCACAG--CGCCGACGGTGTCGCG-----TTCCACAT 153235 ||||| | | ||| ||| ||||| | ||| | || | |||| |||||||| Sbjct 330087 -TCCTTGA--GGCTGGCCCAGTCCCAGCGACCGCTGTTGG-GCCGCGCATTCTTCCACAT 330032 Query 153236 GTCGTACTGTAACACTCC-TCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGT 153294 |||| |||| | | || ||| ||||| || ||||| | || || ||| ||| | Sbjct 330031 GTCGAACTGCAGAATGCCCTCG-CTGGCCGGGCTGCCCGTGAAGGTCTCGTACGGGCCCT 329973 Query 153295 CGCGTTGGGCCAGTTCGCAGCTA-GCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATT 153353 | | ||||| || || | | | ||||| ||| || |||| || |||||| ||| Sbjct 329972 CCTCCTTCGCCAGCTC-CATCGACGACTCGACCGCAGCAAAGTAGATCGTTTCGAAGATC 329914 Query 153354 TGTTTATTGAGAACGGCCGCTTCTTCGCTCT--CGTACGGCATGCGCAGCAGCACAAAGG 153411 | || | | || || || ||| | |||||| |||| || | |||| Sbjct 329913 TCCGCGTTCAC--CCGCTGCGCCTCCGCCGAGACAAACGGCAGCCGCATGAGGATGAAGG 329856 Query 153412 CGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCG 153471 |||| || || ||||| | |||| ||||||||| || | | ||| ||||| | || Sbjct 329855 CGTCCGCGAGCCCCTGCACGCCGAGGCCGATGGGGCGGTTGCGCATGTTACTGCGGCGCG 329796 Query 153472 CGCTCGCTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTT 153531 | || | | || |||| ||||| || |||| |||||||||||| | | | Sbjct 329795 CCGTCTCGACCGGGTAGTAGTTGCGGTCAATAACGCGGTTGAGGTTGCGTGTGATCTGCT 329736 Query 153532 TAGTTATCGCCTTAAGTTTCTCGAAAT-CATAGGTCATTTCGTCGACGCGTACGCATCGA 153590 | || | | | || || | | || | ||| || ||| ||| | || Sbjct 329735 TTGTCACGGTGTAGAGAAGCTGGTGGTTCAGCTCGCGCTTC-TCAACGTCGACGAAGCGC 329677 Query 153591 TTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTT-CGGCGTCGCTGTACTGCAC 153649 || ||||| || || || || || || |||||||| | ||||| || |||||| || Sbjct 329676 GGCAGCGCAATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACG-TGTACTCGAC 329618 Query 153650 GATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCG 153709 ||||| | ||| ||||| ||| || || ||| | ||| | ||| || |||| Sbjct 329617 AATCTCCGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCT 329558 Query 153710 ATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT 153769 ||||| ||||| ||| |||| ||| |||| ||||| ||||||| |||| || | ||| Sbjct 329557 GTTGCATGCGTCCTTGTAGAGGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGAT 329498 Query 153770 ---AAACCTATGCAGGTCCTGCGCTCGCACCCGCT-GCCGATAGCGGCCCTCGCTCTCGT 153825 ||||| || ||||| || | | | || | || |||||||||| ||||| Sbjct 329497 GGCAAACCA---CACCTCCTGGGCCTGGATCGTCTTGACGCC-GCGGCCCTCGGACTCGT 329442 Query 153826 ATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACAC-TGA 153884 | |||||||| || ||||||||||| || || ||||| ||| |||||| || ||| || Sbjct 329441 AGCGCTCGTAGAGCCGCTCAAACTCCTCACCATAGCAATCGCTGAGGCCCGGGCACGTGT 329382 Query 153885 TGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGC 153944 || ||| |||||||| |||| | | ||| || || || | ||| |||||||| || Sbjct 329381 TG-GGATCCATCAGCGTCCACTTCCCCTCGCTTTTCACACGCCTCATAAACAGATCTGGG 329323 Query 153945 ACCCAGAGCGCGTACATGAGGTCGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTT 154002 | ||| ||||| || | |||||||| |||| || || || ||| ||||||||| Sbjct 329322 ATCCACAGCGCATAGAAGAGGTCGCGGGCGCGCTG--GTCATCTTTTCCCGTGTTGCGTT 329265 Query 154003 TCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCAC 154062 |||| || | || | ||| ||||||||||||||| || | |||||||| | ||| | Sbjct 329264 TCAGCAGCAGAAAGCCAAAGACGTCGGCGTGCCAGGGCTCGAGATAGACGGCAAAGGCGC 329205 Query 154063 CTTTACGCTTTCCG---CCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCA 154119 | || ||||| ||| ||||| || |||| ||| | | |||||||||||||| | || Sbjct 329204 CCTTGCGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCA 329145 Query 154120 TGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCA 154179 | || | || ||| | | |||||||| || | || | |||||| ||||| | Sbjct 329144 TTGGCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTATATAGCTGCCCGCCGCGCGGA 329085 Query 154180 CTTGATGCACGTTAACGCCAATGCCGCC-GCCGTACTTTGAT-ATGGCAGCGCAGTCGCC 154237 | ||||||| | |||||| ||||| |||| ||||| | || | ||||| || Sbjct 329084 TGTTGTGCACGTGCAGGCCAATACCGCCGGCCG--CTTTGCTGATCACCGCGCACTCCTT 329027 Query 154238 CAGCGTCCTGTAGATGCCGTCGATGCTATCGT-CGCGGACGCCGAGCAAGAAACACGAAC 154296 |||||| |||||||||||||||||| || | | |||||| | || ||| ||||| | Sbjct 329026 CAGCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGCC-ACCAGGAAGCACGAGC 328968 Query 154297 ACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGT-AAACAGT 154355 ||||||||| | | || || || ||||||||| || | ||||| || || || Sbjct 328967 TCATTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGC 328908 Query 154356 TTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCG 154415 |||| ||| | | |||||| || ||| | || ||| |||||||||||||| Sbjct 328907 CCTTGG-ACATGAGGTCGTACGTCTCACGCACGTTCTTGAGATCTGCGCCGTGAATGCCG 328849 Query 154416 AGCGCGACGCGCATGAGCATGTGCTGCGGACGTTC 154450 || || || ||||||| ||| ||||| ||||| || Sbjct 328848 AGAGCAACACGCATGAACATCTGCTGTGGACGCTC 328814 >seq76 Length=120750 Score = 159 bits (176), Expect = 3e-34 Identities = 367/539 (68%), Gaps = 13/539 (2%) Strand=Plus/Plus Query 52304 GCTGCTGAATGCGTTCGAGCACG-TGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGA 52362 ||||||| | ||| | || ||| | |||||| | | || ||||| ||||||| || Sbjct 111668 GCTGCTGCACGCGATACAG-ACGATCCCGTGCATCCAGAAGAAGGCGGAGTGGGCCGTGC 111726 Query 52363 AGTGGATCGAGAGCGACACCGCCACGCTGGCCG-AGCGCATGGTGGCCTTCGCCATAGTC 52421 |||||||| |||| | ||| | ||| | | |||| || | | ||| ||| || Sbjct 111727 GGTGGATCGGGAGC---AGCGCGA-GCTTTCAGGAGCGGCTGATCGGCTTTGCCGCGGTG 111782 Query 52422 GAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATA 52481 |||||| | || |||||||| || ||| | || | | || | | || | Sbjct 111783 GAGGGCATTTTCTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGTCTG 111842 Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| || |||||||||||||||||| | || ||||||||||| || || ||||||||| Sbjct 111843 ATGCCAGGGCTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGTCTACACACGGAC 111902 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCT 52600 || || ||||| ||||| ||| | | | | || || || | || | Sbjct 111903 TTCGCATGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 111962 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || | ||| |||||| ||||| ||||| | | |||||||||||| Sbjct 111963 GAG-ATCATTGTGGATGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGT 112021 Query 52661 CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCG-AGTACATCGAGTTTGTGGCGGATC 52719 |||| | |||||||||||| || ||| ||| ||||||||||||| || ||||| | Sbjct 112022 GCGGCTGATTGGCATGAACGCGGAGCTGATG-GCGCAGTACATCGAGTTCGTCGCGGACC 112080 Query 52720 GTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGC-TCGCAATCCGTTTGAGTTT 52778 | ||| ||||| |||||| || ||| ||| | || | ||| | ||||| || || Sbjct 112081 GGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTACCACTCGACGC-AGCCGTTCGATTTC 112139 Query 52779 ATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| | | || ||||| ||||||| || ||||| ||||||||| | || || ||||| Sbjct 112140 ATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTCTTCGAGAAGAGGGTGGGGGAGTA 112198 >seq55 Length=202884 Score = 154 bits (170), Expect = 1e-32 Identities = 366/539 (68%), Gaps = 13/539 (2%) Strand=Plus/Minus Query 52304 GCTGCTGAATGCGTTCGAGCACG-TGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGA 52362 ||||||| | ||| | || ||| | |||||| | | || ||||| ||||||| || Sbjct 180333 GCTGCTGCACGCGATACAG-ACGATCCCGTGCATCCAGAAGAAGGCGGAGTGGGCCGTGC 180275 Query 52363 AGTGGATCGAGAGCGACACCGCCACGCTGGCCG-AGCGCATGGTGGCCTTCGCCATAGTC 52421 |||||||| |||| | || | ||| | | |||| || | | ||| ||| || Sbjct 180274 GGTGGATCGGGAGC---AGTGCGA-GCTTTCAGGAGCGGCTGATCGGCTTTGCCGCGGTG 180219 Query 52422 GAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATA 52481 |||||| | ||||||||||| || ||| | || | | || | | || | Sbjct 180218 GAGGGCATTTTTTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGTCTG 180159 Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| || |||||||||||||||||| | || ||||||||||| || || ||||||||| Sbjct 180158 ATGCCAGGGCTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGTCTACACACGGAC 180099 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCT 52600 || || ||||| ||||| ||| | | | | || || || | || | Sbjct 180098 TTCGCATGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 180039 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| | || ||| |||||| ||||| ||||| | | |||||||||||| Sbjct 180038 GAGATTATTGT-GGATGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGT 179980 Query 52661 CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCG-AGTACATCGAGTTTGTGGCGGATC 52719 |||| | |||||||||||| ||| ||| ||| ||||||||||||| || ||||| | Sbjct 179979 GCGGCTGATTGGCATGAACGCGGAGTTGATG-GCGCAGTACATCGAGTTCGTCGCGGACC 179921 Query 52720 GTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGC-TCGCAATCCGTTTGAGTTT 52778 | ||| ||||| |||||| || ||| ||| | || | ||| | ||||| || || Sbjct 179920 GGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTACCACTCGACGC-AGCCGTTCGAATTC 179862 Query 52779 ATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| | | || ||||| ||||||| || ||||| ||||||| | || || ||||| Sbjct 179861 ATGGAGATGATCTCGCTGCAGGGCAAAACAAACTTCTTCGAGAGGAAGGTGGGGGAGTA 179803 >seq15 Length=500758 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| |||| || | || | | |||||||| || ||||||||||| Sbjct 224174 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGA 224115 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||| || || || |||| |||| || ||||| |||||||| || Sbjct 224114 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGG 224055 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | |||||| ||| |||||| Sbjct 224054 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCGGCTCCAC 223995 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 ||| | || | |||||| || ||||| || || || || |||||||||| Sbjct 223994 CTCCAGCGCGATCGTTTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGG 223945 >seq27 Length=379527 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 138386 AGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGC 138445 ||||||| |||| |||| || | || | | |||||||| || ||||||||||| Sbjct 515 AGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCG 456 Query 138446 TCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | || || ||||| || || || |||| |||| || ||||| ||||| || | Sbjct 455 AGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGCG 396 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | || || || ||||| ||| || || | | || | |||||| ||| ||||| Sbjct 395 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCA 336 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | ||| || || ||||| || || || || ||||||||| Sbjct 335 CCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259347986240