Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2 129 6e-25 seq15 111 1e-19 seq27 105 6e-18 seq485 86.0 6e-12 >seq2 Length=1059033 Score = 129 bits (142), Expect = 6e-25 Identities = 535/826 (65%), Gaps = 31/826 (4%) Strand=Plus/Minus Query 146680 TACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTT- 146738 |||| |||||||| | ||| ||||| ||||||||| |||| | ||| || ||||| Sbjct 329625 TACTCGACAATCTCCGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTC 329566 Query 146739 -ACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGG 146797 ||| ||||||| | |||||||||||| ||| |||| || || || |||| | | Sbjct 329565 GACTTGC--TGTTGCATGCGTCCTTGTAGAGGATGAACGGCCCGCCCGTCTCGATCTGCG 329508 Query 146798 TCTCGACGATGAATCTAAACAAATCTC-TGGCCTTTACTTGTCTTT-CGTACAGTTTATT 146855 ||| | |||| | || || | ||| ||| | | | ||||| || | | Sbjct 329507 ACTCCAGGATGG--CAAACCACACCTCCTGGGCCTGGATCGTCTTGACGCCGCGGCCCTC 329450 Query 146856 CTTTTCGTATTTCTCGTACAATATTTCAAAACTAGAACCGTACTCGTCGAGGAGGCCGGG 146915 ||||| |||||| | ||||| ||| || ||| |||||| || Sbjct 329449 GGACTCGTAGCGCTCGTAGAGCCGCTCAAACTCCTCACCATAGCAATCGCTGAGGCCCGG 329390 Query 146916 ATACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTT-CACGCGTTCCATAAACA 146974 || | |||||| | ||||| ||| | | || | || ||| || |||||||| Sbjct 329389 GCACGTGTTGGGATCCATCAGCGTCCACT-TCCCCTCGCTTTTCACACGCCTCATAAACA 329331 Query 146975 AATCGGGAATCCAAAG-GCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATG 147033 ||| || ||||| || || || | | |||||| || ||| || ||| || Sbjct 329330 GATCTGGGATCCACAGCGCATAGAAG-AGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTG 329272 Query 147034 TTGCGTCTCAAGTTGAGGACATCGTAA-ATTTCCGGATGCCAAGGCTCCACGTATGCGGC 147092 |||||| ||| | | || | | || | || | ||||| ||||| | || |||| Sbjct 329271 TTGCGTTTCA-GCAGCAGAAAGCCAAAGACGTCGGCGTGCCAGGGCTCGAGATAGACGGC 329213 Query 147093 GAGTGCGCCTTTTCGCTTACCGCC---CTGATCGACGTGGCGCACCATGTTATTGAAGAC 147149 | ||||| || ||||||||||| ||| || |||| ||| | |||| |||||||| Sbjct 329212 AAAGGCGCCCTTGCGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGAC 329153 Query 147150 TCGTAACATGGACACGAGGCCGCCGGATTTTGTG---GTGCC-GTTGTATTGA------- 147198 |||| ||| | |||||| ||| || | | || || | | ||| | Sbjct 329152 GCGTAGCATTGGCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTATATAGCTGCCCGC 329093 Query 147199 -GCGCTGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGA 147257 |||| || | | |||||| ||| || | ||| ||| || || |||| ||| | Sbjct 329092 CGCGCGGATGTTGTGCACGTGCAGGCCAATACCGCCGGCCGCTTTGCTGATCACCGCGCA 329033 Query 147258 CTCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTT-GATGCATTGCAGGAAAC 147316 ||| | || || | ||||||||||||||||||||||||||| || || |||||| | Sbjct 329032 CTCCTTCAGCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGC-CACCAGGAAGC 328974 Query 147317 ACGAACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGA 147376 |||| | |||||| || ||||| || ||| || || ||| ||||||| |||| Sbjct 328973 ACGAGCTCATTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGA 328914 Query 147377 ACGTGCCCAGACTCATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAA 147436 | |||| ||| | | ||||| ||| || || | | || ||||||||| Sbjct 328913 AGAAGCCCTTGGACATGAGGTCGTACGTCTCACGCACGTTCTTGAGATCTGCGCCGTGAA 328854 Query 147437 TGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAAT 147482 || | || || || ||||||| ||| ||||| || || ||| |||| Sbjct 328853 TGCCGAGAGCAACACGCATGAACATCTGCTGTGGACGCTCCACAAT 328808 >seq15 Length=500758 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||| ||||| || || || ||||| || Sbjct 224173 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 224114 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 224113 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 224054 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| ||||| | ||| || Sbjct 224053 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCGGCTCCACC 223994 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || | | | ||||||||||||||| || || || || |||||||||| Sbjct 223993 TCCAGCGCGATCGTTTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGG 223945 >seq27 Length=379527 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||| ||||| || || || ||||| || Sbjct 513 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 454 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 453 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGCGGG 394 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| ||||| | ||| || Sbjct 393 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACC 334 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | | | ||| ||||||||||| || || || || ||||||||| Sbjct 333 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 286 >seq485 Length=1379 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||||| |||||||| || || || |||||||||||| Sbjct 22 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 81 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | |||| ||||| | ||| || || | | | | Sbjct 82 TCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATC 141 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || ||||||||||| || || || || |||||||||| Sbjct 142 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGG 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497875670080