Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq76 113 6e-20 seq55 100 3e-16 >seq76 Length=120750 Score = 113 bits (124), Expect = 6e-20 Identities = 347/532 (65%), Gaps = 20/532 (4%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| ||||| |||| ||||||||||||||| || || || | || ||| ||||||| Sbjct 112199 GTACTCCCCCACCCTCTTCTCGAAGAAGTTCGTTTTGCCCTGCAGCGAGATCATCTCCAT 112140 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 127350 ||||| || || | | | |||| | | | | || | | || || || Sbjct 112139 GAAATCGAACGGCTGCGTCGAGTGGTAGTGCTTCTCCTCGCCGAGCGACACCAGCAGCCG 112080 Query 127351 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 127410 |||| |||| |||| ||||||| | |||| ||| | |||||| || || || Sbjct 112079 GTCCGCGACGAACTCGATGTACTGCGCCATCAGCTCCGCGTTCATGCCAATCAGCCGCAC 112020 Query 127411 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTG 127470 || |||||||| |||||||| | ||| |||| ||| || ||| | ||| | | Sbjct 112019 CGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCATCCACAATGATCTCCAG 111960 Query 127471 AATAGTGTC-CACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCA------- 127522 | || | | ||| || ||| | | || ||||| |||||| Sbjct 111959 CACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGC----GAGTTGTACAGCAGGCATGC 111906 Query 127523 -AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 127581 || || ||| ||||||||||| || |||||||| || || ||| ||| ||||| Sbjct 111905 GAAGTCCGTGTGTAGACCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCTGG 111846 Query 127582 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 127641 ||| ||||| |||||||||| |||||| | ||| || || || || || ||||| || || Sbjct 111845 CATCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCGGAAAAGAAAATGCC 111786 Query 127642 CTCCACACACGCGAACGCAAAT-AGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACC 127700 |||||| | || || || || || ||||| || ||| | | | | | || Sbjct 111785 CTCCAC-CGCGGCAAAGCCGATCAGCCGCTCCTGAA---AGCTCGCGCTGCTCCCGATCC 111730 Query 127701 ACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 || || ||||||| ||||| |||| ||| || |||| ||||| ||||| Sbjct 111729 ACCGCACGGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGTATCGC 111678 >seq55 Length=202884 Score = 100 bits (110), Expect = 3e-16 Identities = 158/223 (71%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| ||||||||||| || |||||||| || || ||| ||| |||||||| ||||| Sbjct 180105 GTGTAGACCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCTGGCATCAGACC 180164 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||||| |||||| | ||| || || || || || || || || |||||||| | Sbjct 180165 GCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCGGAAAAAAAAATGCCCTCCAC-CG 180223 Query 127651 CGCGAACGCAAAT-AGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCG 127709 || || || || || ||||| || ||| | | | | | |||| || | Sbjct 180224 CGGCAAAGCCGATCAGCCGCTCCTGAA---AGCTCGCACTGCTCCCGATCCACCGCACGG 180280 Query 127710 CCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 |||||| ||||| |||| ||| || |||| ||||| ||||| Sbjct 180281 CCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGTATCGC 180323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613503426930720