Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq15 176 5e-39 seq27 172 6e-38 seq7 165 9e-36 seq485 141 1e-28 >seq15 Length=500758 Score = 176 bits (194), Expect = 5e-39 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||| || || ||||| | Sbjct 224161 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCC 224102 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| |||| |||||||||||| | ||| | || ||||||| Sbjct 224101 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 224042 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | ||||||||||| ||||| |||| || ||| Sbjct 224041 TCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATC 223982 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| |||||||| || || ||||| ||||| Sbjct 223981 GTTTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 223947 >seq27 Length=379527 Score = 172 bits (190), Expect = 6e-38 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||| || || ||||| | Sbjct 501 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCC 442 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| |||| |||||||||||| | ||| | || ||||||| Sbjct 441 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTG 382 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | ||||||||||| ||||| |||| || ||| Sbjct 381 TCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATC 322 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| |||||||| || || ||||| ||||| Sbjct 321 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 287 Score = 147 bits (162), Expect = 2e-30 Identities = 137/174 (79%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| || ||||||||||||||||| Sbjct 11 CTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 70 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||| | ||| | || |||||||||| |||||| ||| | | Sbjct 71 GATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 130 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 | | | ||||||||||| ||||| |||| || ||| || ||||| |||||||| Sbjct 131 CTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGT 184 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||| || || ||||| | Sbjct 273 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCC 214 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTG 46473 || || ||||||||||||||||| |||| ||||| Sbjct 213 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTG 179 >seq7 Length=654660 Score = 165 bits (182), Expect = 9e-36 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| ||||||| || || ||| | || Sbjct 509 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTACGAGAGGGTGAGGCCG 450 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 | || ||||||||||||||||| |||| | |||||||||| ||||| | || ||||||| Sbjct 449 TACTCCAGCTGCTTGCCGGCGAAGATCAGGGGCTGCTGGTCCGCCGGGATGCCCTCCTTG 390 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | ||||||||||| ||||| |||| || ||| Sbjct 389 TCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATC 330 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || ||||| |||||||| || || ||||| |||||| || Sbjct 329 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATTGTG 291 Score = 82.4 bits (90), Expect = 9e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 46483 CGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTC 46542 ||| | || |||||||||| |||||| ||| | || | | ||||||||||| || Sbjct 519 CGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTC 578 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||| |||| || ||| || ||||| |||||||| || || ||||| |||||| || Sbjct 579 CACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATTGTG 633 >seq485 Length=1379 Score = 141 bits (156), Expect = 1e-28 Identities = 137/176 (78%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 46418 TAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGG 46477 ||||| || || ||||| | || || ||||||||||||||||| |||| |||||||||| Sbjct 1 TAGTCCGAGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGG 60 Query 46478 TCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTC 46537 || | ||| | || |||||||||| |||||| ||| | || | | |||||||||| Sbjct 61 TCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTC 120 Query 46538 GATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | ||||| |||| || ||| || ||||| |||||||| || || ||||| ||||| Sbjct 121 GGCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565234923783840