Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq76 295 7e-75 seq55 277 2e-69 seq27 131 2e-25 seq15 131 2e-25 seq7 122 9e-23 >seq76 Length=120750 Score = 295 bits (326), Expect = 7e-75 Identities = 580/835 (69%), Gaps = 26/835 (3%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||||||||| || || || || |||||| | ||||| || || || ||||| |||| Sbjct 112217 CATCACGCCGGCCTTCTGGTACTCCCCCACCCTCTTCTCGAAGAAGTTCGTTTTGCCCTG 112158 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGT---GCC 132707 || || || | | ||| ||||| || || | | | || ||||||||| ||| Sbjct 112157 CAGCGAGATCATCTCCATGAAATCGAACGGCTGCGTCGAGTGGTAGTGCTTCTCCTCGCC 112098 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGC 132766 || | | | || ||||||| ||| || |||||||||||||| |||| ||| | | ||| Sbjct 112097 GAGC--GAC-ACCAGCAGCCGGTCCGCGACGAACTCGATGTACTGCGCCATCAGCTCCGC 112041 Query 132767 AATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCG 132825 | | | || | ||| |||||||||||||| ||| || ||| || |||||||| Sbjct 112040 GTTCATG-CCAATCAGCCGCACCGGCAGCGCGTCGCAGATGAACTCGC-GCTCGATGTTC 111983 Query 132826 ACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT-CGGCCGTTGCACCAAATGC-- 132882 ||||| || | ||| ||| |||||| | |||| | || ||| | ||| Sbjct 111982 ACCGCATCCACAATGATCTCCAGCACGCGCTC-GCGCGGCAGCTTGTGCTTGATGTGCGA 111924 Query 132883 -TTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTT 132941 ||| ||| || ||| || ||||| || | |||||||| | || ||||| ||||| Sbjct 111923 GTTGTACAGCAGGCATGCGAAGTCCGTGTGTAGACCCTCGTCGCGCGAGATGAGCTCGTT 111864 Query 132942 GCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACT 133001 |||||| |||| || ||||| || ||||| || || ||||| || | ||| ||| Sbjct 111863 GCTGAACGTCAGCCCTGGCATCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGA 111804 Query 133002 GCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC-ACCAGGCGCTCGCCGAACGTGG 133060 || |||||||| | |||||| || || || |||||| | ||| ||||| | ||| | Sbjct 111803 CCCGGAAAAGAAAATGCCCTCCACCGCGGC-AAAGCCGATCAGCCGCTC-CTGAAAG--- 111749 Query 133061 CTT-CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATC 133119 || | |||| ||||||| |||| ||||| || ||||| | | || |||||| ||| Sbjct 111748 CTCGCGCTGCTCCCGATCCACCGCACGGCCCACTCCGCCTTCTTCTGGATGCACGGGATC 111689 Query 133120 GTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC-ACGTAGGTGTCGAT 133178 || | || |||| || || || || ||||| || | | || | ||| ||||| | Sbjct 111688 GTCTGTATCGCGTGCAGCAGCCGCAGCTTCTCCTC-GCTGTCCGTGATGTACGTGTCCAG 111630 Query 133179 GAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCA 133238 || || ||| | |||||||| | ||||||||| | || || ||||| || Sbjct 111629 CAGCACAGAGTACGTCTCCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGC 111570 Query 133239 CCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGAT 133298 |||||||| ||||| ||| || ||| |||| | ||||| ||| |||| || Sbjct 111569 GCGCGCCTCTGGCACCTTCACGTCGCTCATGAAGCGCTGCGCAAGATTCTCGATGACTAT 111510 Query 133299 GCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT 133358 |||||||||| ||||||| ||||| ||||| ||||||||||| || ||||| |||||| Sbjct 111509 GCCGTCGCTGCCGGCGAAGAAGGCAAGCACATGCTTGATGAAGTGCCGCTCCCCGTCGTT 111450 Query 133359 CAAGCGCT-CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCA 133412 | |||| | ||||||| | |||| ||| |||||| | |||||| || ||||| Sbjct 111449 C-AGCGTTGCCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCACCGTCCA 111396 >seq55 Length=202884 Score = 277 bits (306), Expect = 2e-69 Identities = 574/834 (69%), Gaps = 24/834 (3%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||||||||| || || || || |||||||| |||| || || || ||||| |||| Sbjct 179784 CATCACGCCGGCCTTCTGGTACTCCCCCACCTTCCTCTCGAAGAAGTTTGTTTTGCCCTG 179843 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGT---GCC 132707 || || || | | ||| || || || || | | | || ||||||||| ||| Sbjct 179844 CAGCGAGATCATCTCCATGAATTCGAACGGCTGCGTCGAGTGGTAGTGCTTCTCCTCGCC 179903 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCA 132767 || | | | || ||||||| ||| || |||||||||||||| |||| ||| || Sbjct 179904 GAGC--GAC-ACCAGCAGCCGGTCCGCGACGAACTCGATGTACTGCGCCATCAACTCCGC 179960 Query 132768 ATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGA 132826 || | || | ||| |||||||||||||| ||| || ||| || |||||||| | Sbjct 179961 GTTCATGCCAATCAGCCGCACCGGCAGCGCGTCGCAGATGAACTCGC-GCTCGATGTTCA 180019 Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT-CGGCCGTTGCACCAAATGC--- 132882 |||| || | || ||| |||||| | |||| | || ||| | ||| Sbjct 180020 CCGCATCCACAATAATCTCCAGCACGCGCTC-GCGCGGCAGCTTGTGCTTGATGTGCGAG 180078 Query 132883 TTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTG 132942 ||| ||| || ||| || ||||| || | |||||||| | || ||||| |||||| Sbjct 180079 TTGTACAGCAGGCATGCGAAGTCCGTGTGTAGACCCTCGTCGCGCGAGATGAGCTCGTTG 180138 Query 132943 CTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTG 133002 ||||| |||| || ||||| || ||||| || || ||||| || | ||| ||| Sbjct 180139 CTGAACGTCAGCCCTGGCATCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGAC 180198 Query 133003 CCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC-ACCAGGCGCTCGCCGAACGTGGC 133061 || ||||| || | |||||| || || || |||||| | ||| ||||| | ||| | | Sbjct 180199 CCGGAAAAAAAAATGCCCTCCACCGCGGC-AAAGCCGATCAGCCGCTC-CTGAAAG---C 180253 Query 133062 TT-CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCG 133120 | | |||| ||||||| |||| ||||| || ||||| | | || |||||| |||| Sbjct 180254 TCGCACTGCTCCCGATCCACCGCACGGCCCACTCCGCCTTCTTCTGGATGCACGGGATCG 180313 Query 133121 TTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC-ACGTAGGTGTCGATG 133179 | | || |||| || || || || ||||| || | | || | ||| ||||| | Sbjct 180314 TCTGTATCGCGTGCAGCAGCCGCAGCTTCTCCTC-GCTGTCCGTGATGTACGTGTCCAGC 180372 Query 133180 AGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCAC 133239 || || ||| | |||||||| | ||||||||| | || || ||||| || Sbjct 180373 AGCACAGAGTACGTCTCCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCG 180432 Query 133240 CGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATG 133299 |||||||| ||||| ||| || ||| |||| | ||||| ||| |||| ||| Sbjct 180433 CGCGCCTCTGGCACCTTCACGTCGCTCATGAAGCGCTGCGCAAGATTCTCGATGACTATG 180492 Query 133300 CCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTC 133359 ||||||||| ||||||| ||||| ||||| ||||||||||| || ||||| ||||||| Sbjct 180493 CCGTCGCTGCCGGCGAAGAAGGCAAGCACATGCTTGATGAAGTGCCGCTCCCCGTCGTTC 180552 Query 133360 AAGCGCT-CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCA 133412 |||| | ||||||| | |||| ||| |||||| | |||||| || ||||| Sbjct 180553 -AGCGTTGCCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCACCGTCCA 180605 >seq27 Length=379527 Score = 131 bits (144), Expect = 2e-25 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| || ||| | | || || ||| | | | Sbjct 287 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 346 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | | |||| | || | || |||| ||||| ||||| || |||||| |||| Sbjct 347 GACACGATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCAT-CCCGCCAGACC 404 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| |||||||| || | ||||| ||| ||||||| Sbjct 405 AGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACA 464 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| | |||||||| |||||||||| || | |||||| Sbjct 465 ACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 514 Score = 100 bits (110), Expect = 3e-16 Identities = 137/186 (74%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 38262 ACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCT 38320 ||||| || ||||| || ||| | | || || ||| | | ||||| | | |||| | Sbjct 184 ACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGCGACACGATCGAGAACG-T 126 Query 38321 TAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACCAACAGCGGCTCATTTACG 38379 || | || |||| ||||| ||||| || ||||||| |||| ||||| || || | || Sbjct 125 GAAGGCCAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGACCAGCAGCGTCTGATCTTCG 67 Query 38380 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGA 38439 | ||||| |||||||| |||| ||||| ||| |||||||||||||| ||||| | | Sbjct 66 CCGGCAAGCAGCTGGAGGACGGCCGCACGCTCTCGGACTACAACATCCAGAAGGAGTCCA 7 Query 38440 CGCTGC 38445 |||||| Sbjct 6 CGCTGC 1 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| |||||||| || | ||||| ||| ||||||||| Sbjct 179 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAAC 238 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | |||||||| |||||||||| || | |||||| Sbjct 239 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 286 >seq15 Length=500758 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || |||||||| ||| | | || || ||| | | | Sbjct 223947 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAAACGATCGCGCTGGAGGTGGAGCCGAGC 224006 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACCA 38362 |||| | | | | || | || |||| ||||| ||||| || ||||||| |||| Sbjct 224007 GACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGACCA 224065 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| || | ||||| ||| |||||||| Sbjct 224066 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAA 224125 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | |||||||| |||||||||| || | |||||| Sbjct 224126 CATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 224174 >seq7 Length=654660 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || ||||| || ||||| || ||| | | || || ||| | | Sbjct 294 AATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAG 353 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | | |||| | || | || |||| ||||| ||||| || || || |||| Sbjct 354 CGACACGATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGGCGGACC 412 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | |||| || || | ||| ||||| |||||||| ||| | ||||||| |||||| Sbjct 413 AGCAGCCCCTGATCTTCGCCGGCAAGCAGCTGGAGTACGGCCTCACCCTCTCGTACTACA 472 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| | |||||||| |||||||||| || | ||||| Sbjct 473 ACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169723937280