Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq36 174 2e-38 seq2 147 3e-30 seq86 136 5e-27 >seq36 Length=297002 Score = 174 bits (192), Expect = 2e-38 Identities = 467/705 (66%), Gaps = 17/705 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || || || | ||| || || |||||||| || || || || || | || Sbjct 225548 TCGAAGTCCTCGCCGCCAAGGTGCGTGTCACCCGCGGTTGCCTTTACCTCGAACACGCCG 225607 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || || | | || || ||||| ||||| || || || ||||| || ||||| ||| Sbjct 225608 GACTCGATCGTCAGCAGCGTTACATCGAACGTGCCGCCGCCAAGGTCGAAGATGAGCACG 225667 Query 7577 TTCGTATCGTCGTCTTTGTTCTTA---TCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 ||| | || | | | | ||| || | |||||||||||||| || || || || Sbjct 225668 TTCTTCTCTCCCTTGTCGCCCTTGCGGTCCATGCCGTACGCGATAGCGGCGGCGGTGGGC 225727 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || || || || || ||| ||||||||||| | | || || ||||| || || Sbjct 225728 TCGTTGATGATGCGCAGCACGTTGAGGCCAGCAATGGAGCCGGCGTCCTTCGTTGCCTGG 225787 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || ||||| ||||| ||||| ||||| ||||| || || || | | | || | ||| || Sbjct 225788 CGCTGCGAGTCGTTGAAGTACGCCGGCACCGTCACCACGGCCTTCTTCACCTGCTTGCCC 225847 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCC 7813 || |||| ||||| | || ||||| || || ||||| | || ||||| || | Sbjct 225848 AGGTACGCCTCCGCCGTCTCCTTCATCTTCTGCAGCACCATAGCCGAGATCTCCTCTG-G 225906 Query 7814 GCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACC 7872 | ||| || || | | | | || || || | || || ||| | Sbjct 225907 GAAAAAGGTCTTGGACTGGTTCTGGTACTCGACGCTGATGACCGGCTT-GCCG--TCCTT 225963 Query 7873 GGGGATAACCTTATACGACCAATCTTTCATAT-CGTCT--TGGACCTGTTGGTCCGAAAA 7929 | || ||||| | | ||| | ||||| | || || || | | | ||| || Sbjct 225964 GACGACCACCTTGAAGGGCCAGTGCTTCATGTCCGACTGAAGGTCAGGATCGTC---GAA 226020 Query 7930 CTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTG 7989 ||| | ||||| | ||||| || ||||| || ||||| | ||||||||||| || Sbjct 226021 CTTGCGGCCGATCATGCGCTTCGCGTCAAACACGGTGTTGCTCGGGTTCATGGCCACCTG 226080 Query 7990 GTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGG 8049 ||||||||| || || ||||| || || || | || || || || || || || || Sbjct 226081 GTTCTTCGCGGCATCGCCGATCAGGCGCTC---TGTCTCGGTGAAGGCCACATAAGACGG 226137 Query 8050 GGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCC 8109 || || || || || |||||||| ||||| || || || | ||||| | ||||||| Sbjct 226138 CGTTGTGCGGTTACCCTGGTCGTTGGCAATGATGTCCACCTGCTCGTTCTTGAAGACGCC 226197 Query 8110 GACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCTTGAGT 8154 ||||||||| ||||| || || | || || ||||| || | ||| Sbjct 226198 GACGCACGAGTACGTCGTGCCCAGGTCGATGCCGATGGCGTTAGT 226242 >seq2 Length=1059033 Score = 147 bits (162), Expect = 3e-30 Identities = 233/329 (71%), Gaps = 10/329 (3%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| || |||||||| | ||| ||||| || ||||| || || |||| ||| Sbjct 458111 ATCGAAGTCCTCACCACCGAGGTGGGTATCACCGTTCGTCGCGACCACCTCGAAGAAACC 458052 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | || || | | || ||| ||||| ||||| || ||||| ||||| || | || | Sbjct 458051 CTCGTCGATTGTCAGCAGCGACACATCGAACGTGCCGCCACCGAGGTCGAAGACCAGGAT 457992 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 |||| | ||| | ||||||| || |||||||| || |||||||| || || || Sbjct 457991 GTTCTTCTCGCCAGCTTTGTTA------AGCCCGTACGCTATGGCCGCCGCTGTGGGCTC 457938 Query 7636 ATTAATAATACGAA-GACAGTTCAGGCCAGCAATAGTTGCCGCA-TCTTTCGTCGCTTGT 7693 || || || || | ||| ||| ||||| || || || ||| | || ||||| || || Sbjct 457937 GTTGATGATGCGGACGAC-GTTAAGGCCGGCGATC-TTCCCGGAGTCCTTCGTTGCCTGG 457880 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || |||| ||| |||||||| || || ||||||||||| |||| | | || |||| ||| Sbjct 457879 CGCTGCGCATCATTAAAGTACGCTGGCACCGTTACGACGGCGTTCTTCACCTTCTCGCCG 457820 Query 7754 AGATACGATTCCGCGATATCTTTCATTTT 7782 || | | || | ||| |||||||| || Sbjct 457819 AGGAAGGTCTCTGAGATCTCTTTCATCTT 457791 >seq86 Length=75542 Score = 136 bits (150), Expect = 5e-27 Identities = 163/221 (74%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 7928 AACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTT 7987 ||||| | || || || ||||| || || || || ||||| | |||||||| || Sbjct 215 AACTTGCGGCCAATCAGGCGCTTCGCGTCGAACACCGTGTTGTGCGGGTTCATTGCCACC 274 Query 7988 TGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGAT 8047 |||||||| || || || ||||| || || || | |||| ||||| |||||||| Sbjct 275 TGGTTCTTTGCGGCATCGCCGATCAGCCGCTCCGAGT---CCGTGAACGCAACGTACGAC 331 Query 8048 GGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACG 8107 || ||||| || || || ||||||||||| || || || ||||| ||||| ||||| ||| Sbjct 332 GGTGTCGTGCGGTTACCCTGGTCGTTCGCGATGATATCCACGCGTTCGTTCTGCCACACG 391 Query 8108 CCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 || |||||||| ||||| || || | || || ||||| || Sbjct 392 CCCACGCACGAGTACGTCGTGCCCAGGTCGATGCCGATGGC 432 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 7619 GCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCA 7678 ||||||||||| || || || || || || || | |||||||||||| || | || Sbjct 8688 GCCGCCGCCGTCGGCTCGTTGATGATGCGCAGCACCTCCAGGCCAGCAATCGTCCCGGCG 8747 Query 7679 TCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCC 7738 || ||||| || || || ||||| ||||| ||||| ||||| ||||| || || || | | Sbjct 8748 TCCTTCGTTGCCTGGCGCTGCGAGTCGTTGAAGTACGCCGGCACCGTCACCACGGCCTTC 8807 Query 7739 GTGACTTTCTTACCGAGATAC 7759 | || | ||| || || ||| Sbjct 8808 TTCACCTGCTTGCCCAGGTAC 8828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635128893933280