Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 129 7e-25 >seq2 Length=1059033 Score = 129 bits (142), Expect = 7e-25 Identities = 559/866 (65%), Gaps = 21/866 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||| | ||||||||||| || || |||| || || || | |||| | | || Sbjct 328820 CCACAGCAGATGTTCATGCGTGTTGCTCTCGGCATTCACGGCGCAGATCTCAAGAACGTG 328879 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 ||||| |||||| |||||| || | |||| |||||| || || |||||||| Sbjct 328880 CGTGAGACGTACGACCTCATGTCCAAGGGCTTCTTCACCCACGCCACCCCGACCCTCTTT 328939 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| || || || | || |||||| | || ||||| | || ||||| || Sbjct 328940 AACGCCGGCACCCCGAAGCCGCAAATGAGCTCGTGCTTCCTGGTGGCGTCGAAGGAAGAC 328999 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCT-CAAAGTGGGCTGG 111850 ||| | ||||| |||| ||| || | || || || ||| ||||| || | || Sbjct 329000 AGCATCGACGGCATCTACGACACGCTGAAGGAGTGCGCGGTGATCAGCAAAGCGGCC-GG 329058 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-GGTACA 111908 ||||| || ||||| | || | || | || | | ||| ||| ||||| Sbjct 329059 CGGTATTGGCCTGCACGTGCACAACATCCGCGCGGCG--GGCAGCTATATAGCTGGTACG 329116 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || || || | || | | |||||||| ||||| || ||| ||| || ||||| Sbjct 329117 AACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAACAACACCGCCCGCTAC 329176 Query 111969 GTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 || |||| | ||| || |||||||| | | || |||||||| ||||| |||||| Sbjct 329177 GTGGACCAGGGTGGCGGTAAGCGCAAGGGCGCCTTTGCCGTCTATCTCGAGCCCTGGCAC 329236 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 || || || | | || || | || | |||| || | || || ||| | Sbjct 329237 GCCGACGTCTTTGGCTTTCTGCTGCTGAAACGCAACACGGGAAAAGATGACCAGCGCGCC 329296 Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG-GAGAG 112144 ||||| ||||||| || || ||||| |||||||| || |||| | | || | | ||| Sbjct 329297 CGCGACCTCTTCTATGCGCTGTGGATCCCAGATCTGTTTATGAGGCGTGTGAAAAGCGAG 329356 Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGA 112204 || || ||| | || | ||| ||| | || || ||| |||| | ||||| Sbjct 329357 GGG-AAGTGGACGCTGATGGATCCCAACACGTGCCCGGGCCTCAGCGATTGCTATGGTGA 329415 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG-GGCGACTGCGACGGTGC 112263 ||||||||| |||||| |||||| || | || |||| | |||| | | Sbjct 329416 GGAGTTTGAGCGGCTCTACGAGCGCTACGAGTCCGAGGGCCGCGGCGTC-AAGACGAT-C 329473 Query 112264 CAGCTGCC---GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 112320 ||| ||| || |||||| || || || |||| || | |||||| || || | Sbjct 329474 CAG--GCCCAGGAGGTGTGGTTTGCCATCCTGGAGTCGCAGATCGAGACGGGCGGGCCGT 329531 Query 112321 ATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 112380 || || ||||| ||||| || ||| ||| || || |||||| | || ||||| Sbjct 329532 TCATCCTCTACAAGGACGCATGCAACAGCAAGTCGAACCAGAAGAATCTTGGCACGATCA 329591 Query 112381 AGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAG-ATGAGACGGCTGTG 112439 || | || ||||| || || || || | || | || | | | | |||||||| ||| Sbjct 329592 AGTGCTCGAACCTATGCACGGAGATTGTCGAGTACAC-GTCGCCGCAGGAGACGGCGGTG 329650 Query 112440 TGTAACCTCGCATCAATCGCTCTCCC 112465 || |||||||| || || || || || Sbjct 329651 TGCAACCTCGCCTCCATTGCGCTGCC 329676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620738582434240