Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 141 1e-28 seq19 86.0 7e-12 seq38 82.4 9e-11 seq7 82.4 9e-11 seq5 82.4 9e-11 >seq2 Length=1059033 Score = 141 bits (156), Expect = 1e-28 Identities = 554/856 (65%), Gaps = 19/856 (2%) Strand=Plus/Minus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || || || || || || | ||||| || |||||||| | | |||||||| | | Sbjct 329676 GGCAGCGCAATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACGTGTACTCGACA 329617 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || || | ||| || | ||| ||||| || | |||||| ||||| ||| || Sbjct 329616 ATCTCCGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTG 329557 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||||| || ||||||||||| ||| | ||| |||||||| |||| |||| || || Sbjct 329556 TTGCATGCGTCCTTGTAGAGGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATG 329497 Query 106637 GCCTTCCACACAT-CGGCGGCTGGTACAATGGCGTTG--GCC-CGTCCCTCCGCCTCGTA 106692 || |||||| | | | | |||| || | ||| ||| || ||||| | |||||| Sbjct 329496 GCAAACCACACCTCCTGGGCCTGG----ATCGTCTTGACGCCGCGGCCCTCGGACTCGTA 329441 Query 106693 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGT 106751 |||||| |||||||||||| ||| || ||| ||| || || | ||| Sbjct 329440 GCGCTCGTAGAGCCGCTCAAACTCCTCA-CCATAGCAATCGCTGAGGCCCGGGCACGTGT 329382 Query 106752 CTGGACAGAAAAGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGA 106810 ||| | || | ||| || || | || || || ||| |||| || || ||||| Sbjct 329381 TGGGATCCATCAGCGTCCACTTCCCCTCGCTTTTC-ACACGCCTCATAAACAGATCTGGG 329323 Query 106811 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 106870 |||||||| | | ||||| || | || || || | || |||| || Sbjct 329322 ATCCACAGCGCATAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTC 329263 Query 106871 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 106930 | | || || | | || || |||||||| ||||| |||||||| || | | ||| Sbjct 329262 AGCAGCAGAAAGCCAAAGACGTCGGCGTGCCAGGGCTCGAGATAGACGGCAAAGGCGCCC 329203 Query 106931 TTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 106987 || || || ||| | || | || ||||| || ||| ||| || ||||| |||||| Sbjct 329202 TTGCGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATT 329143 Query 106988 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCAC 107046 || | | || | || || || || || ||| || | || | | Sbjct 329142 GGCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTATA-TAGCTGCCCGCCGCGCGGAT 329084 Query 107047 ATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTG-AGATTTGCGCACACTCCGTAA 107105 | || | ||||| |||||||| || | || ||||| ||| ||| |||||| | | Sbjct 329083 GTTGTGCACGTGCAGGCCAATACCGCC-GGCCGCTTTGCTGATCACCGCGCACTCCTTCA 329025 Query 107106 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 107165 | || | ||||| |||| ||| ||| ||||| || | |||||||| | || Sbjct 329024 GCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCA 328965 Query 107166 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTT 107225 | ||||| | || || || || || |||||||| || || ||||| |||| | || | Sbjct 328964 TTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCT 328905 Query 107226 GGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGG 107285 |||||| |||||| ||||| || | | ||| | ||||| ||||||| | Sbjct 328904 TGGACATGAGGTCGTACGTCTCACGCACGTTCTTGAGATCTGCGCCGTGAATGCCGAGAG 328845 Query 107286 CCACACGCATAAACAT 107301 | |||||||| ||||| Sbjct 328844 CAACACGCATGAACAT 328829 >seq19 Length=458113 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136166 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 136225 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 188396 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 188337 Query 136226 GGTAGGA 136232 ||||||| Sbjct 188336 GGTAGGA 188330 >seq38 Length=313407 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 159484 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 159543 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 159544 CAGGTAGGAG 159553 >seq7 Length=654660 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 236657 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 236598 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 236597 CAGGTAGGAG 236588 >seq5 Length=874999 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 222008 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 221949 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 221948 CAGGTAGGAG 221939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589977171618080