Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 239 8e-58 seq76 203 6e-47 seq55 194 3e-44 >seq2 Length=1059033 Score = 239 bits (264), Expect = 8e-58 Identities = 806/1234 (65%), Gaps = 41/1234 (3%) Strand=Plus/Minus Query 212948 GTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCT 213007 ||| | ||| || ||| ||||||||| || ||||||||| || |||||||| | ||| Sbjct 330205 GTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGCGAGGTGGA 330146 Query 213008 GGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG-- 213065 || || |||||||| || ||||| || ||| | || || || || || | Sbjct 330145 CGCGGTTGGCATGGGGGCAACCAGCAGGGAGTTGCGCATGCCCACCT-GC--ATCACCTT 330089 Query 213066 CGCC--GAAGCTCTGCCCAGTCCCATCTGCCAGACA-GGTCCTCGTCCTTCACGTTCCAC 213122 | || || ||| ||||||||||| | || || || || | ||| |||||| Sbjct 330088 CTCCTTGAGGCTG-GCCCAGTCCCAGCGACCGCTGTTGGGCCGCG-CATTC---TTCCAC 330034 Query 213123 ATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCA 213182 ||||| ||||||| ||||| | ||| | ||||||||| | | | ||| ||||| Sbjct 330033 ATGTCGAACTGCAGAATGCCCTCGCTGGCCGGGCTGCCCGTGAAGGTCTCGTACGGGCCC 329974 Query 213183 TGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATC 213242 | |||||| |||||||| |||| || | ||||| ||||||| ||||| || ||| Sbjct 329973 TCCTCCTTCGCCAGCTCCATCGACGACTCGACCGCAGCAAAGTAGATCGTTTCGAAGATC 329914 Query 213243 TCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACA 213302 ||| ||| | | || ||||| | || || |||| | |||| | ||| | Sbjct 329913 TCCGCGTTCACCCGCTGCGCCTCCGCCGAGACAAACGGCAGCCGCATGAGGATGAAGGCG 329854 Query 213303 TCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTT-GGAGCA 213361 || || |||||||| || |||| ||||||||| | || | || |||| || || || Sbjct 329853 TCCGCGAGCCCCTGCACGCCGAGGCCGATGGGGCGGTTGCGCATGTTA--CTGCGGCGCG 329796 Query 213362 CTC-CTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTT 213420 | ||| | ||||| |||||| ||| || | |||||||||||| ||| | | Sbjct 329795 CCGTCTCGACCGGGTAGTAGTTGCGGTCAATAACGCGGTTGAGGTTGCGTGTGATCTGCT 329736 Query 213421 TGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAG 213480 | || || | || || ||| || | | || | | | | || || | Sbjct 329735 TTGTCACGGTGTAGAGAAGCTGGTGGTTCAGCTCGCGCTTCTCAACGTCGACGAAGCGCG 329676 Query 213481 GCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGA 213540 |||| || ||| ||| |||||||| || ||| |||||| | |||||||| | | Sbjct 329675 GCAGCGCAATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACGTGTACTCGACAA 329616 Query 213541 TCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGT 213600 |||| ||||| ||||| ||| ||| ||||| || |||| ||||| ||||| || Sbjct 329615 TCTCCGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTGT 329556 Query 213601 TGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCT 213660 || | ||||||||||| ||| | || || ||||| | ||| ||| |||| || Sbjct 329555 TGCATGCGTCCTTGTAGAGGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGAT-- 329498 Query 213661 GGCT--CCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGT 213717 ||| ||| | | | ||||| || | | |||| || ||| | | | ||||| Sbjct 329497 GGCAAACCACACCTCCTGGGCCTGGATCGTCT---TGAC-GCCGCGGCCCTCGGACTCGT 329442 Query 213718 ACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGA---CCCTGTCCAGTCCCGGACAGG 213774 | | ||||||||| | || || | || || | ||| || ||||| || | Sbjct 329441 AGCGCTCGTAGAGCCGCTCAAACTCCTCACCATAGCAATCGCTG---AGGCCCGGGCACG 329385 Query 213775 ATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCG 213834 |||| ||| || |||| | ||| || | | || | | ||| ||||| || | Sbjct 329384 TGTTGGGATCCATCAGCGTCCACTTCCCCTCGCTTTTCACACGCCTCATAAACAGATCTG 329325 Query 213835 GGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTT---TT 213891 ||| ||||||||| ||| ||||| | || | | || || ||| | ||| || Sbjct 329324 GGATCCACAGCGCATAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTT 329265 Query 213892 TGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGG 213951 | |||| |||||| |||||| ||| |||||||| ||||| | |||| |||||||| Sbjct 329264 TCAGCAGC---AGAAAGCCAAAGACGTCGGCGTGCCAGGGCTCGAGATAGACGGCAAAGG 329208 Query 213952 CGCCCGGCCTCTT---GCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCA 214008 ||||| | ||| ||| ||||||||||| | ||| ||||||||| ||| | Sbjct 329207 CGCCCTTGCGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTA 329148 Query 214009 GGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC 214068 | | || || |||||||| ||| ||||| || || |||||||| ||| | || | Sbjct 329147 GCATTGGCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTATATAGCTGCCCGCCGCGC 329088 Query 214069 TCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCC 214128 | |||| || | || || || || ||||| ||| ||||| ||||| | Sbjct 329087 GGATGTTGTGCACGTGCAGGCCAATACCGCCGGCCGCTTTGCTGATCACCGCGCACTCCT 329028 Query 214129 TCACAGTCTCCATGATGCCGGCCATGCTGTCATC 214162 ||| || || ||||||| | |||||||| || Sbjct 329027 TCAGCGTGTCGTAGATGCCGTCGATGCTGTCTTC 328994 >seq76 Length=120750 Score = 203 bits (224), Expect = 6e-47 Identities = 566/855 (66%), Gaps = 15/855 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| |||||||| || ||||| |||||||| || || |||| || |||||| |||| Sbjct 112202 CTGGTACTCCCCCACCCTCTTCTCGAAGAAGTTCGTTTTGCCCTGCAGCGAGATCATCTC 112143 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 |||||| ||| || | | | || || | | ||| | | ||||||| Sbjct 112142 CATGAAATCGAACGGCTGCGTCGAGTGGTAGTGCTTCTCCTCGCCGAGCGACACCAGCAG 112083 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | ||||||||| |||||||||| | | ||| || ||||||||| || || Sbjct 112082 CCGGTCCGCGACGAACTCGATGTACTGCGCCATCAGCTCCGCGTTCATGCCAATCAGCCG 112023 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||| |||| || | || ||||| ||| || | ||| || ||| | | |||| Sbjct 112022 CACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCATCCACAATGATCTC 111963 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGC---AGGTGCTTGGCATAGAGCATGCAGGC 48135 | ||||| ||| || ||| || | |||| | || |||| ||| || Sbjct 111962 CAGCACGCG---CTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCATGC 111906 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| |||| | || ||||| || ||||||| ||||| ||| || || || Sbjct 111905 GAAGTCCGTGTGTAGACCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCTGG 111846 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | || | || || |||||||| | || ||| || || || ||||| ||||| Sbjct 111845 CATCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCGGAAAAGAAAATGCC 111786 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 |||||| || || || || | |||| ||| | ||||| || || || |||||| Sbjct 111785 CTCCACCGCGGCAAAGCCGATCAGCCGCTC-CTGAAAGCT-CGCGCTGCTCCC-GATCCA 111729 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 | ||||| || |||||||||| |||||| || ||||||| ||| || | | || Sbjct 111728 CCGCACGGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGTATCGCGTGCAGCAG 111669 Query 48376 CTTCTTGCACTCACCT-GC-GTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 | | || || ||| || ||||| | || || |||||| | |||| |||| Sbjct 111668 CCGCA-GCT-TCTCCTCGCTGTCCGTGATGTACGTGTCCAGCAGCACAGAGTACGTCTCC 111611 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 ||||| | ||||| || | ||||||||||||||| || | ||||| ||||| | Sbjct 111610 GAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGCGCCTCTGGCACCTTC 111551 Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 || || | ||| | || | |||||||| ||||||| || || | || ||| Sbjct 111550 ACGTCGCTCATGAAGCGCTGCGCAAGATTCTCGATGACTATGCCGTCGCTGCCGGCGAAG 111491 Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGT 48613 |||||||| ||||| || | ||| || ||||| || | | || | |||| ||| Sbjct 111490 AAGGCAAGCACATGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCGTTGCCCAGTCCTTC 111431 Query 48614 ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGA-CGCGAGTGCTTTTTTGTA 48672 | ||| ||||||||||| | || ||||| ||||||| | | | | ||| | ||||| Sbjct 111430 ATGTCGTTGCCCAGGTCGATCTCCTCCACCGTCCAGATGCAGCTCTCCTGC-TCCTTGTA 111372 Query 48673 CATGCCCCATATGTC 48687 | ||| ||| ||||| Sbjct 111371 CTTGCGCCAGATGTC 111357 >seq55 Length=202884 Score = 194 bits (214), Expect = 3e-44 Identities = 564/855 (66%), Gaps = 15/855 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| |||||||| | |||| ||||||||||| || |||| || |||||| |||| Sbjct 179799 CTGGTACTCCCCCACCTTCCTCTCGAAGAAGTTTGTTTTGCCCTGCAGCGAGATCATCTC 179858 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 |||||| ||| || | | | || || | | ||| | | ||||||| Sbjct 179859 CATGAATTCGAACGGCTGCGTCGAGTGGTAGTGCTTCTCCTCGCCGAGCGACACCAGCAG 179918 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | ||||||||| |||||||||| | | ||| | ||||||||| || || Sbjct 179919 CCGGTCCGCGACGAACTCGATGTACTGCGCCATCAACTCCGCGTTCATGCCAATCAGCCG 179978 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||| |||| || | || ||||| ||| || | ||| || ||| | | ||||| Sbjct 179979 CACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCATCCACAATAATCTC 180038 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGC---AGGTGCTTGGCATAGAGCATGCAGGC 48135 | ||||| ||| || ||| || | |||| | || |||| ||| || Sbjct 180039 CAGCACGCG---CTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCATGC 180095 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| |||| | || ||||| || ||||||| ||||| ||| || || || Sbjct 180096 GAAGTCCGTGTGTAGACCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCTGG 180155 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | || | || || |||||||| | || ||| || || || || || ||||| Sbjct 180156 CATCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCGGAAAAAAAAATGCC 180215 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 |||||| || || || || | |||| ||| | ||||| || || || |||||| Sbjct 180216 CTCCACCGCGGCAAAGCCGATCAGCCGCTC-CTGAAAGCT-CGCACTGCTCCC-GATCCA 180272 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 | ||||| || |||||||||| |||||| || ||||||| ||| || | | || Sbjct 180273 CCGCACGGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGTATCGCGTGCAGCAG 180332 Query 48376 CTTCTTGCACTCACCT-GC-GTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 | | || || ||| || ||||| | || || |||||| | |||| |||| Sbjct 180333 CCGCA-GCT-TCTCCTCGCTGTCCGTGATGTACGTGTCCAGCAGCACAGAGTACGTCTCC 180390 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 ||||| | ||||| || | ||||||||||||||| || | ||||| ||||| | Sbjct 180391 GAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGCGCCTCTGGCACCTTC 180450 Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 || || | ||| | || | |||||||| ||||||| || || | || ||| Sbjct 180451 ACGTCGCTCATGAAGCGCTGCGCAAGATTCTCGATGACTATGCCGTCGCTGCCGGCGAAG 180510 Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGT 48613 |||||||| ||||| || | ||| || ||||| || | | || | |||| ||| Sbjct 180511 AAGGCAAGCACATGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCGTTGCCCAGTCCTTC 180570 Query 48614 ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGA-CGCGAGTGCTTTTTTGTA 48672 | ||| ||||||||||| | || ||||| ||||||| | | | | ||| | ||||| Sbjct 180571 ATGTCGTTGCCCAGGTCGATCTCCTCCACCGTCCAGATGCAGCTCTCCTGC-TCCTTGTA 180629 Query 48673 CATGCCCCATATGTC 48687 | ||| ||| ||||| Sbjct 180630 CTTGCGCCAGATGTC 180644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931527071073280