Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2 176 8e-39 seq76 170 4e-37 seq55 170 4e-37 >seq2 Length=1059033 Score = 176 bits (194), Expect = 8e-39 Identities = 580/884 (66%), Gaps = 37/884 (4%) Strand=Plus/Minus Query 221702 AGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATC 221761 || |||| | ||| ||||| ||||| ||| ||| | | || |||| | ||| Sbjct 329673 AGCGCAATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACGTGTACTCGACAATC 329614 Query 221762 TCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTG 221821 || || || ||||| ||||||||| || || || | || || || ||||||| ||| Sbjct 329613 TCCGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTG 329554 Query 221822 GCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTG 221881 |||||||||||||| || || || ||||| ||||| | ||| | | |||| || Sbjct 329553 CATGCGTCCTTGTAGAGGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATGGCA 329494 Query 221882 TCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCAC---CCTCGGTCTTTTCATAC 221938 ||| | || |||| || || ||||||| | | |||||| || | | Sbjct 329493 AACCACACCTC-CTGGGCCTGGA--TCGTCTTGACGCCGCGGCCCTCGGACTCGTAGCGC 329437 Query 221939 CCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCG 221998 || |||||| ||||||| ||||| || ||| ||||| || ||| || | Sbjct 329436 TCG---TAGAGCCGCTCAAACTCCTCACCATAGCAATCGCTGAGGCCCGGGCACGTGTTG 329380 Query 221999 GGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATC 222058 ||| |||||| |||| | | | | ||| || | | ||| || || || |||||| Sbjct 329379 GGATCCATCAGCGTCCACTTCCCCTCGCTTTTCACACGCCTCATAAACAGATCTGGGATC 329320 Query 222059 CACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTT---TTTCCTC 222115 |||||||| | ||||| || | || ||||| || || || |||| |||| | Sbjct 329319 CACAGCGCATAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTCAGC 329260 Query 222116 AGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCG 222175 || || ||| |||| | ||| |||||||| ||||| ||||||||||| | ||||| Sbjct 329259 AG---CAGAAAGCCAAAGACGTCGGCGTGCCAGGGCTCGAGATAGACGGCAAAGGCGCCC 329203 Query 222176 GGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTC 222235 ||||| ||||||||| ||||| | | |||||||| ||| || | Sbjct 329202 TTGCGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATT 329143 Query 222236 GGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTA-CGCACCGCCGGCCCTCAG 222294 || || || ||||| || ||||| || || || || | ||||| || | | Sbjct 329142 GGCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTATATAGCTGCCCGCC-GCGCGGAT 329084 Query 222295 GTT----ACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCT 222350 ||| || |||| ||| ||||| ||||| ||| ||||| ||||| || Sbjct 329083 GTTGTGCACGTGCAG----GCCAATACCGCCGGCCGCTTTGCTGATCACCGCGCACTCCT 329028 Query 222351 TGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTT-GACGTTCAGCAGAAAACAAGAC 222409 | || ||||| |||||| || || ||| ||||| |||| || ||| || || || Sbjct 329027 TCAGCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACG-CCACCAGGAAGCACGAG 328969 Query 222410 GACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAG 222469 ||| || | || | || | ||||||||| || || || ||||||| || ||| || Sbjct 328968 CTCATTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAG 328909 Query 222470 CCCCTAGACATCAGATCGTACGTCTCTACG-AC--TCTGGCGATGTTGTCCCCGTGAATC 222526 ||| | ||||| || ||||||||||| ||| || ||| | ||| | | ||||||| Sbjct 328908 CCCTTGGACATGAGGTCGTACGTCTC-ACGCACGTTCTTGAGATCT--GCGCCGTGAA-- 328854 Query 222527 TGCATGGCGCA--TCTCATGTACATGTACTGGGGCCTCTCCACA 222568 ||| | ||| | |||| |||| | ||| || | ||||||| Sbjct 328853 TGCCGAGAGCAACACGCATGAACATCTGCTGTGGACGCTCCACA 328810 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 221056 CTCGGTACGCATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTT 221115 |||| | |||||| || |||||||||| | | | || || |||| | || ||| Sbjct 330304 CTCGTTCCGCATCGACTCGTTCCATAGACCACGCGCGATGAGGTCCATGACGAGGTACTT 330245 Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 |||||| || |||| || || ||||| | | ||| | ||| || ||||| || Sbjct 330244 GTTCACAACAGGGAACTCGCCGCTCAGCACGCGGCGGACGTAGATGTTCGAGGTGAAGGG 330185 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || |||||||||||| || ||||| | ||| ||||| |||||||| || || Sbjct 330184 CTCGAAGCACTCGTTGTTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGGGGCAAC 330125 Query 221236 CAGCAGACTGTTGCGCA 221252 |||||| |||||||| Sbjct 330124 CAGCAGGGAGTTGCGCA 330108 >seq76 Length=120750 Score = 170 bits (188), Expect = 4e-37 Identities = 370/539 (69%), Gaps = 21/539 (4%) Strand=Plus/Plus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGT--ACGCTCTATCC 25569 |||||| | || ||||| || |||| ||| |||||| | | |||| ||||| | | Sbjct 111395 CTGGACGGTGGAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGCAACGCTGAA--C 111452 Query 25570 AAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATA 25629 | | |||| ||| || ||||| | ||| | || ||||| || | | || || ||| Sbjct 111453 GACGGGGAGCGGCACTTCATCAAGCATGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATA 111512 Query 25630 GTGAACGAGAATCTGTGCG-AGAGATTCACCAGGGAAGTGCAGTACGTG---GAGGC-CA 25684 || | ||||||||| |||| || | |||| || || ||| || ||| ||||| | Sbjct 111513 GTCATCGAGAATCT-TGCGCAGCGCTTCATGAGCGACGTGAAG---GTGCCAGAGGCGCG 111568 Query 25685 AGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGC 25744 | ||| |||||| |||||| || || || || | ||||| ||| ||| | || Sbjct 111569 CGCGTT-CTACGGGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGC 111627 Query 25745 TTCTGATGACGTACATTACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAG 25803 | ||| |||||||| || ||| || |||| || | |||||| | || || || Sbjct 111628 TGCTGGACACGTACATCACGGACAGCGAGGAGA-AGCTGCGGCTGCTGCACGCGATACAG 111686 Query 25804 CACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGC 25863 || || ||||| ||| ||||||| ||||||| || ||||||| ||| ||| Sbjct 111687 ACGATCCCGTGCATCCAGAAGAAGGCGGAGTGGGCCGTGCGGTGGATCGGGAGC---AGC 111743 Query 25864 GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGT 25923 || | ||| ||||||||| | | |||||| || ||||||||||| || || ||| Sbjct 111744 GCGAGCTTTCAGGAGCGGCTGATCGGCTTTGCCGCGGTGGAGGGCATTTTCTTTTCCGGG 111803 Query 25924 TCGTT-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTC 25982 ||||| ||| || | |||||||| ||| || || ||||| |||||| || Sbjct 111804 TCGTTCTGC-GCGCTGTTCTGGCTGAAGAAGCGCGGTCTGATGCCAGGGCTGACGTTCAG 111862 Query 25983 CAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 ||||||||||||| | ||||||||||| |||| || || || |||||||| |||| Sbjct 111863 CAACGAGCTCATCTCGCGCGACGAGGGTCTACACACGGACTTCGCATGCCTGCTGTACA 111921 >seq55 Length=202884 Score = 170 bits (188), Expect = 4e-37 Identities = 370/539 (69%), Gaps = 21/539 (4%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGT--ACGCTCTATCC 25569 |||||| | || ||||| || |||| ||| |||||| | | |||| ||||| | | Sbjct 180606 CTGGACGGTGGAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGCAACGCTGAA--C 180549 Query 25570 AAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATA 25629 | | |||| ||| || ||||| | ||| | || ||||| || | | || || ||| Sbjct 180548 GACGGGGAGCGGCACTTCATCAAGCATGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATA 180489 Query 25630 GTGAACGAGAATCTGTGCG-AGAGATTCACCAGGGAAGTGCAGTACGTG---GAGGC-CA 25684 || | ||||||||| |||| || | |||| || || ||| || ||| ||||| | Sbjct 180488 GTCATCGAGAATCT-TGCGCAGCGCTTCATGAGCGACGTGAAG---GTGCCAGAGGCGCG 180433 Query 25685 AGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGC 25744 | ||| |||||| |||||| || || || || | ||||| ||| ||| | || Sbjct 180432 CGCGTT-CTACGGGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGC 180374 Query 25745 TTCTGATGACGTACATTACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAG 25803 | ||| |||||||| || ||| || |||| || | |||||| | || || || Sbjct 180373 TGCTGGACACGTACATCACGGACAGCGAGGAGA-AGCTGCGGCTGCTGCACGCGATACAG 180315 Query 25804 CACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGC 25863 || || ||||| ||| ||||||| ||||||| || ||||||| ||| || Sbjct 180314 ACGATCCCGTGCATCCAGAAGAAGGCGGAGTGGGCCGTGCGGTGGATCGGGAGC---AGT 180258 Query 25864 GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGT 25923 || | ||| ||||||||| | | |||||| || ||||||||||| ||||| ||| Sbjct 180257 GCGAGCTTTCAGGAGCGGCTGATCGGCTTTGCCGCGGTGGAGGGCATTTTTTTTTCCGGG 180198 Query 25924 TCGTT-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTC 25982 ||||| |||| | | |||||||| ||| || || ||||| |||||| || Sbjct 180197 TCGTTCTGCGCGC-TGTTCTGGCTGAAGAAGCGCGGTCTGATGCCAGGGCTGACGTTCAG 180139 Query 25983 CAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 ||||||||||||| | ||||||||||| |||| || || || |||||||| |||| Sbjct 180138 CAACGAGCTCATCTCGCGCGACGAGGGTCTACACACGGACTTCGCATGCCTGCTGTACA 180080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928839087604480