Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2 102 1e-16 >seq2 Length=1059033 Score = 102 bits (112), Expect = 1e-16 Identities = 546/861 (63%), Gaps = 11/861 (1%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 |||||| | ||||||||||| || || ||||||| ||||| | ||| | | || Sbjct 328820 CCACAGCAGATGTTCATGCGTGTTGCTCTCGGCATTCACGGCGCAGATCTCAAGAACGTG 328879 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 ||||| |||||| |||||| | || | |||| ||||| || || |||||||| Sbjct 328880 CGTGAGACGTACGACCTCATGTCCAAGGGCTTCTTCACCCACGCCACCCCGACCCTCTTT 328939 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || || || || || | ||||| ||| | |||||||| | || ||||| ||| Sbjct 328940 AACGCCGGCACCCCGAAGCCGCAAATGAGCTCGTGCTTCCTGGTGGCGTCGAAGGAAGAC 328999 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATC-TCAAAGTGGGCTGG 75450 ||| |||| ||||| | || || | |||||| ||| ||| ||||| ||| || Sbjct 329000 AGCATCGACGGCATCTACGACACGCTGAAGGAGTGCGCGGTGATCAGCAAAG-CGGCCGG 329058 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGC-CAATAAATCTCGTATTCGGGGGACAA 75509 |||||||| ||||| | || | | | || | || ||| || || | Sbjct 329059 CGGTATTGGCCTGCACGTGCACAACATCCGCGCGGCGGGCAGCT-ATATAGCTGGTACGA 329117 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | || || | || | | |||||||| ||||| || ||| ||| || ||||| | Sbjct 329118 ACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAACAACACCGCCCGCTACG 329177 Query 75570 TAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATG 75626 | | || | || || |||||||| || | || ||||| | || || ||||| | Sbjct 329178 TGGACCAGGGTGGCGGTAAGCGCAAGGGCGCCTTTGCCGTCTATCTCGAGCCCTGGCACG 329237 Query 75627 CCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTA 75686 |||| || | | || || | | || |||| || | || || || Sbjct 329238 CCGACGTCTTTGGCTTTCTGCTGCTGAAACGCAACACGGGAAAAGATGACCAGCGCGCCC 329297 Query 75687 GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTG 75746 | || ||||| | | |||||||| ||||| || || |||| ||| | ||| || | | Sbjct 329298 GCGACCTCTTCTATGCGCTGTGGATCCCAGATCTGTTTATGAGGCGTG-TGAAAAGCGAG 329356 Query 75747 GTCAA-TGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGA-CGCGGTGGGTGA 75804 | || ||| | || | ||| ||| | || || ||| ||| || | ||||| Sbjct 329357 GGGAAGTGGACGCTGATGGATCCCAACACGTGCCCGGGCCTCAGCGATTGCTAT-GGTGA 329415 Query 75805 GGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACC 75864 ||||||||| |||||| || || ||||| | | | ||| | | Sbjct 329416 GGAGTTTGAGCGGCTCTACGAGCGCTACGAGTCCGAGGGCCGCGGCGTCAAGACGATCCA 329475 Query 75865 AGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATAT 75924 ||| || || ||| || || || | || |||| ||||| || || | || Sbjct 329476 GGCCCAGGAGGTGTGGTTTGCCATCCTGGAGTCGCAGATCGAGACGGGCGGGCCGTTCAT 329535 Query 75925 GCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAG 75984 || |||||||| || || |||| ||| ||||| |||||| | || || |||||| | Sbjct 329536 CCTCTACAAGGACGCATGCAACAGCAAGTCGAACCAGAAGAATCTTGGCACGATCAAGTG 329595 Query 75985 CTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAA 76044 ||| || || |||||||| ||| | |||||||| | | |||||||| || ||||| Sbjct 329596 CTCGAACCTATGCACGGAGATTGTCGAGTACACGTCGCCGCAGGAGACGGCGGTGTGCAA 329655 Query 76045 TTTGGCATCAATCGCCCTTCC 76065 | || || || || || || Sbjct 329656 CCTCGCCTCCATTGCGCTGCC 329676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596565931096960