Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq36 170 3e-37 seq86 132 6e-26 >seq36 Length=297002 Score = 170 bits (188), Expect = 3e-37 Identities = 457/693 (66%), Gaps = 8/693 (1%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || ||||| | || || || ||||| || || || || | | || || | Sbjct 226236 GCCATCGGCATCGACCTGGGCACGACGTACTCGTGCGTCGGCGTCTTCAAGAACGAGCAG 226177 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || || || || | || ||||| || ||||| ||||| || || || || ||||| || Sbjct 226176 GTGGACATCATTGCCAACGACCAGGGTAACCGCACAACGCCGTCTTATGTGGCCTTCACC 226117 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || | || || || | || |||||||| || || ||| || |||||||| | ||| Sbjct 226116 GAGACAGAGCGCCTGATCGGCGATGCCGCGAAGAACCAGGTGGCCATGAACCCGAGCAAC 226057 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || || |||||||||||||| | || || |||||||| ||| | | || Sbjct 226056 ACCGTGTTTGACGCGAAGCGCATGATCGGCCGCAAGTTCGACGATCCTGACCTTCAGTCG 225997 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| ||||| | | | ||| || || | || | ||||| | || | Sbjct 225996 GACATGAAGCACTGGCCCT-TCAAGGTGGTC--GTCAAGGACGGCAAGCCGGTCATCAGC 225940 Query 195599 GTTGAATTTCACGGTGAGAAGAA-ACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTT 195657 || || | || || || || ||| | || || || || ||| |||||||| | Sbjct 225939 GTCGAGTACCAGAACCAGTCCAAGACCTTTTTC-CCAGAGGAGATCTCGGCTATGGTGCT 225881 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGT 195717 | |||||||||||||| ||||| | | | |||| || ||||| | || || || Sbjct 225880 GCAGAAGATGAAGGAGACGGCGGAGGCGTACCTGGGCAAGCAGGTGAAGAAGGCCGTGGT 225821 Query 195718 GACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTAT 195777 ||| || || || ||||||| || || || || ||||| || |||||||| | | || Sbjct 225820 GACGGTGCCGGCGTACTTCAACGACTCGCAGCGCCAGGCAACGAAGGACGCCGGCTCCAT 225761 Query 195778 TGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 ||| || || ||| || | || ||||| || || || || || || || || || || Sbjct 225760 TGCTGGCCTCAACGTGCTGCGCATCATCAACGAGCCCACCGCCGCCGCTATCGCGTACGG 225701 Query 195838 TCTGGA---CAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGG 195894 |||| |||| | | | | ||| || || || | ||||| || || || || || Sbjct 225700 CATGGACCGCAAGGGCGACAAGGGAGAGAAGAACGTGCTCATCTTCGACCTTGGCGGCGG 225641 Query 195895 TACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGC 195954 ||||| ||||| | || || | || || || | ||||| |||||||| || || Sbjct 225640 CACGTTCGATGTAACGCTGCTGACGATCGAGTCCGGCGTGTTCGAGGTAAAGGCAACCGC 225581 Query 195955 TGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||| || || || || || || || ||||| Sbjct 225580 GGGTGACACGCACCTTGGCGGCGAGGACTTCGA 225548 >seq86 Length=75542 Score = 132 bits (146), Expect = 6e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || ||||| | || || || ||||| || || || || ||||| || || || Sbjct 432 GCCATCGGCATCGACCTGGGCACGACGTACTCGTGCGTGGGCGTGTGGCAGAACGAACGC 373 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || || || ||| |||| ||||| || ||||| || || || ||||||||||| || || Sbjct 372 GTGGATATCATCGCGAACGACCAGGGTAACCGCACGACACCGTCGTACGTTGCGTTCACG 313 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || || || || | || ||||||||||| || ||| || |||||||| ||| Sbjct 312 GACTCGGAGCGGCTGATCGGCGATGCCGCAAAGAACCAGGTGGCAATGAACCCGCACAAC 253 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTT 195516 || || || ||||||||||| || ||||| |||||||| Sbjct 252 ACGGTGTTCGACGCGAAGCGCCTGATTGGCCGCAAGTT 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657858354146240