Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2 123 7e-23 >seq2 Length=1059033 Score = 123 bits (136), Expect = 7e-23 Identities = 619/973 (64%), Gaps = 36/973 (4%) Strand=Plus/Minus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTT-GTCGTCGCTGTATTCTACAATCTCA 155645 |||| || || || || || ||||| ||||||| | || || |||| || |||||||| Sbjct 329669 CAATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACG-TGTACTCGACAATCTCC 329611 Query 155646 CAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAA 155705 ||| ||||| || | |||||| ||||| | |||||||||||| || || ||||| || Sbjct 329610 GTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCAT 329551 Query 155706 GCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGC 155765 || |||||||| || ||| | || || ||||| ||||| | ||||| || | | Sbjct 329550 GCGTCCTTGTAGAGGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATGGCAAAC 329491 Query 155766 CAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATAC 155825 || | || |||| | || |||| | | ||| || ||||| || | || Sbjct 329490 CACACCTCCTGGGCCTGGATCGTCTTGACGCCGCGGCCCTCGGACTCGTAGCGCTCGTAG 329431 Query 155826 AG-CGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAA 155884 || || || | |||||||| || ||||| || || || |||||| | | ||| | Sbjct 329430 AGCCGCTC-AAACTCCTCACCATAGCAATCGCTGAGGCCCGGGCACGTGTTGGGATCCAT 329372 Query 155885 CAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGC 155944 ||||| ||| | | | | |||||| |||||| | ||| ||| | || Sbjct 329371 CAGCGTCCACTTCCCCTCGCTTTTCACACGCCTCATAAACAGATCTGGGATCCACAGCGC 329312 Query 155945 ATAGAAAAGGTCCCTTGC-CTTTGACTCCTC-ATCGCCGTGATTC--TTCCGTAGCTCTA 156000 |||||| ||||| | || | || || || | ||||| | | ||| | ||| Sbjct 329311 ATAGAAGAGGTCGCGGGCGCGCTG-GTCATCTTTTCCCGTGTTGCGTTTCAGCAGC---- 329257 Query 156001 AGAATTCCTCA-ATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTC 156059 |||| || | | || | || ||||| ||||| | ||||| || || | | Sbjct 329256 AGAAAGCCAAAGACGTCGGCGTGCCAGGGCTCGAGATAGACGGCAAAGGCGCCCTTGCGC 329197 Query 156060 TT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATA 156116 || ||||||||| || || || || || || || |||||||| | |||||| || | Sbjct 329196 TTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACG 329137 Query 156117 ATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGA 156176 | || || || ||||| || || || |||| || | | ||| | || || Sbjct 329136 AGCCCGTTCGACGTGCCGTTCGTACCAGCTATATAGCTGCCCGCCGCGCGGATGTTGTGC 329077 Query 156177 ATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTG 156236 | || || |||||||| || | | ||| || ||||| ||||| | || | | Sbjct 329076 ACGTGCAGGCCAATACCGCCGGCCGCTTTGCTGATCACCGCGCACTCCTTCAGCGTGTCG 329017 Query 156237 AAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGG- 156295 | || || || || || || | | | | || ||||||| || | ||| || Sbjct 329016 TAGATGCCGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGC 328957 Query 156296 -TCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACA 156354 ||| |||| || ||||| || || || || || || || | || | || |||| Sbjct 328956 TTCGGGGTG--CCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTGGACA 328899 Query 156355 TATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCC 156414 | ||||| ||||| | |||| |||| | |||||||| | || || || | Sbjct 328898 TGAGGTCGTACGTCTCACGCACGTTCTTGAGATCTGCGCCGTGAATGCCGAGAGCAACAC 328839 Query 156415 TCATCCACATATGCTGAGGACGCTCTACAA--------TCACTCC-------ATCAATTC 156459 ||| |||| ||||| |||||||| |||| |||| || || || | Sbjct 328838 GCATGAACATCTGCTGTGGACGCTCCACAATTCGCATCTCACCCCTTCCGGTCTCGATAC 328779 Query 156460 GCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGT 156519 |||| ||||| | ||| ||||| || || ||||||| | || || || || ||| Sbjct 328778 GCAGCAGGTACGAGCGCTCCAGCGTCTTGTACCCGAAGAACTCGAAGTTCAAGTCGCGGG 328719 Query 156520 TGTAATCAATCAT 156532 ||| |||||||| Sbjct 328718 AGTAGTCAATCAT 328706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471808322029804