Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2 185 1e-40 seq76 161 1e-33 seq55 152 6e-31 seq111 98.7 1e-14 seq245 96.9 4e-14 >seq2 Length=1059033 Score = 185 bits (204), Expect = 1e-40 Identities = 221/300 (74%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| |||||||| || |||| ||| |||||||| ||||| |||||||| ||||| || Sbjct 329185 CTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTTCGA 329126 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | |||||| || || || | ||| ||| || ||||| | |||||| || | ||| Sbjct 329125 CGTGCCGTTCGTACCAGCTATATAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCAGGCC 329066 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || |||||||||| ||| ||| | |||||||| || ||||||||||||||||| || Sbjct 329065 AATACCGCCGGCCGCTTTGCTGATCACCGCGCACTCCTTCAGCGTGTCGTAGATGCCGTC 329006 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| ||||| |||| || |||||||| ||||||| | || ||||| Sbjct 329005 GATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGGTGCC 328946 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||| ||||| || || || || |||||| || | |||||| |||||| || Sbjct 328945 GGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTGGACATGAGGTCGTACGT 328886 Score = 107 bits (118), Expect = 2e-17 Identities = 327/496 (66%), Gaps = 16/496 (3%) Strand=Plus/Minus Query 1626985 TCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCGGTC 1627044 || ||||| |||| ||| ||||| || |||| | |||||||||| ||||| | ||| ||| Sbjct 330588 TCCACGGTGAACTTGATCGCGTCCGCCGCGGCCTTGGTGCGCAGGTAGTAGACGCCAGTC 330529 Query 1627045 TTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGCG-TC 1627103 || || ||| ||| | ||| | |||| |||||||| | ||| || | | || Sbjct 330528 TTCAGCCCGGCCTCCCAGGAATAGAAGAGCATGGACGTGATCTGGCCGGAGGTGGGGCTC 330469 Query 1627104 GGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCGCCAT 1627163 | | | | ||||| |||||||| |||||| | || | |||| ||| ||||| Sbjct 330468 TG-GAGGAAGAGGTTCAGCGACTGCGACTGGTCAATGTACTGGCCGCGGTCGCGTGCCAT 330410 Query 1627164 GTCGAT--GGTGACCCGGTTGGGCACCTCCCACACGGTCTTGAAGATGGCCTTGAGGTCG 1627221 || || | | | | || || | ||||||||||||| | | | || | |||||| Sbjct 330409 ATCTATCAGCTTGCGCTGT--GGAATCTCCCACACGGTCCGGTAAAGCTCCCTCAGGTCG 330352 Query 1627222 GGCGGCACCTCGTCGTCGCCAAAGCCCTGCACCGAGCCGTGCGCCGCGACGAGCCTGTCG 1627281 ||||| ||| | ||| | | ||||| | | || || | || Sbjct 330351 TCCGGCATGCCGTTA-----ATAGCGAGG-ATAGAGCCATTGTAAGAGATGATCTCGTTC 330298 Query 1627282 CGAAAGTCGGG-CGT-CCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTGA 1627339 || | ||| ||| ||| || || ||||| || ||| | |||| |||| ||| | Sbjct 330297 CGCA--TCGACTCGTTCCATAGACCACGCGCGATGAGGTCCATGACGAGGTACTTGTTCA 330240 Query 1627340 CCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGC 1627399 | || | || ||||| ||||||||||| ||||||||| ||||| | |||| Sbjct 330239 CAACAGGGAACTCGCCGCTCAGCACGCGGCGGACGTAGATGTTCGAGGTGAAGGGCTCGA 330180 Query 1627400 ACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGA 1627459 | |||| ||||||| || |||||||| || | || || |||||| | || || || | Sbjct 330179 AGCACTCGTTGTTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGGGGCAACCAGCA 330120 Query 1627460 GCGAGTTGCGCAGGCC 1627475 | |||||||||| ||| Sbjct 330119 GGGAGTTGCGCATGCC 330104 Score = 105 bits (116), Expect = 8e-17 Identities = 317/493 (64%), Gaps = 4/493 (1%) Strand=Plus/Minus Query 1628110 GGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACGAAAACTGGACG 1628169 ||||| || | | || |||||||| |||| ||| ||||||| ||| ||| Sbjct 329676 GGCAGCGCAATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACGTGTACTCGACA 329617 Query 1628170 ATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTCAGG 1628229 ||||| ||||| ||||| | || | |||| || || |||| |||||| | | | Sbjct 329616 ATCTCCGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTG 329557 Query 1628230 TTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACGATG 1628289 ||| |||||||||| ||| ||| | ||| |||| ||||||||||||| | | | |||| Sbjct 329556 TTGCATGCGTCCTTGTAGAGGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATG 329497 Query 1628290 GCCGACCAGATCTGGCGCG-CGGGCACGACAGTCCGCGCGCGGCCCTNNNNNNNNNNNNN 1628348 || |||| | || | | | || || | ||| ||||||||| Sbjct 329496 GCAAACCACACCTCCTGGGCCTGGATCGTCTTGACGC-CGCGGCCCTCGGACTCGTAGCG 329438 Query 1628349 NNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCG-TGCAGGCCGGGCGCCTCGGACG 1628407 ||||| || | || ||||| ||| || | |||||| | | | | Sbjct 329437 CTCGTAGAGCCGCTCAAACTCCTCACCATAGCAATCGCTGAGGCCCGGGCACGT-GTTGG 329379 Query 1628408 GACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTCC 1628467 || | |||| ||| | || || | | | || | |||||| || || ||| Sbjct 329378 GATCCATCAGCGTCCACTTCCCCTCGCTTTTCACACGCCTCATAAACAGATCTGGGATCC 329319 Query 1628468 ACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGT 1628527 |||| || || ||||||||||| || || | || || || || ||| ||| || Sbjct 329318 ACAGCGCATAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTCAGCA 329259 Query 1628528 CGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGC 1628587 || || | | | |||||||||||| ||||| || ||| ||||||||||||||||| Sbjct 329258 GCAGAAAGCCAAAGACGTCGGCGTGCCAGGGCTCGAGATAGACGGCAAAGGCGCCCTTGC 329199 Query 1628588 GCTTGCCGCCGCC 1628600 |||| ||||| || Sbjct 329198 GCTTACCGCCACC 329186 Score = 91.5 bits (100), Expect = 2e-12 Identities = 87/109 (80%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 1627868 CGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGGCGGG 1627927 |||| ||||| ||||||||||||| ||| || || |||| ||||| ||| | |||| | Sbjct 329855 CGTCCGCGAGCCCCTGCACGCCGAGGCCGATGGGGCGGTTGCGCATGTTACTGCGGCGCG 329796 Query 1627928 CC-TCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGC 1627975 || || | |||||||||| |||| ||| || |||||||||||||||| Sbjct 329795 CCGTCTCG-ACCGGGTAGTAGTTGCGGTCAATAACGCGGTTGAGGTTGC 329748 >seq76 Length=120750 Score = 161 bits (178), Expect = 1e-33 Identities = 223/309 (72%), Gaps = 5/309 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| ||||| | | |||||| ||||| || ||||||| ||||||||| Sbjct 112207 GCCTTCTGGTACTCCCCCACCCTCTTCTCGAAGAAGTTCGTTTTGCCCTGCAGCGAGATC 112148 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | |||||| | |||||| | | || | ||||||||| || ||||||||| | Sbjct 112147 ATCTCCATGAAATCGAACGGCTGCGTCGAGTGGTAGTGCTTCTCCTCGCCGAGCGACACC 112088 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||| ||||| |||||||||||||| ||| || | ||||||||||| || Sbjct 112087 AGCAGCCGGTCCGCGACGAACTCGATGTACTGCGCCATCAGCTCCGCGTTCATGCCAATC 112028 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||| ||||||||||| |||| | ||||| |||||| | || || || || ||| Sbjct 112027 AGCCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCATCCACAATG 111968 Query 868931 ATCTGCCTGGGCACG-TCGGCCGAGGGCTTG---TTGACGAGCATCGTGTAGAGCAGGCA 868986 |||| || | | || ||| || ||||| |||| | || |||| |||||||| Sbjct 111967 ATCT-CCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCA 111909 Query 868987 GGCAAAGTC 868995 || ||||| Sbjct 111908 TGCGAAGTC 111900 Score = 145 bits (160), Expect = 9e-29 Identities = 211/298 (71%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| || | |||||| ||||| || || | | |||||| ||| | Sbjct 111612 CCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGCGCCTCTGGCACCT 111553 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 || || ||||||| || || || |||||| || |||||||||||| |||||| Sbjct 111552 TCACGTCGCTCATGAAGCGCTGCGCAAGATTCTCGATGACTATGCCGTCGCTGCCGGCGA 111493 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || || || || |||||||| ||||| ||||| ||||| | |||| |||||| Sbjct 111492 AGAAGGCAAGCACATGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCGTTGCCCAGTCCT 111433 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 ||||| || ||||| | |||||| | |||||||| || ||| || |||| Sbjct 111432 TCATGTCGTTGCCCAGGTCGATCTCCTCCACCGTCCAGATGCAGCTCTCCTGCTCCTTGT 111373 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 || | ||| | | ||||| |||| ||||||||||| ||||| ||||| || Sbjct 111372 ACTTGCGCCAGATGTCATGGTACTGGATTGGGAAGAGGACGTAGCGGAACGGGTTCTC 111315 Score = 105 bits (116), Expect = 8e-17 Identities = 140/193 (73%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| |||||||| ||| | |||||||| || | || || ||||| || |||||||| Sbjct 111890 ACCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCTGGCATCAGACCGCGCTT 111831 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||| ||||| || | |||||||| || || || || |||||||| || |||||||| Sbjct 111830 CTTCAGCCAGAACAGCGCGCAGAACGACCCGGAAAAGAAAATGCCCTCCACCGCGGCAAA 111771 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 |||||| |||||||| |||| ||| | |||| ||||||| || ||||| Sbjct 111770 GCCGATCAGCCGCTCCTGAAAG--CTCGCGCTGCTCC----CGATCCACCGCACGGCCCA 111717 Query 869359 GTCGGCCTTTTTC 869371 || ||||| ||| Sbjct 111716 CTCCGCCTTCTTC 111704 >seq55 Length=202884 Score = 152 bits (168), Expect = 6e-31 Identities = 221/309 (72%), Gaps = 5/309 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| ||||| || |||||| ||||| || ||||||| ||||||||| Sbjct 179794 GCCTTCTGGTACTCCCCCACCTTCCTCTCGAAGAAGTTTGTTTTGCCCTGCAGCGAGATC 179853 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | |||||| | |||||| | | || | ||||||||| || ||||||||| | Sbjct 179854 ATCTCCATGAATTCGAACGGCTGCGTCGAGTGGTAGTGCTTCTCCTCGCCGAGCGACACC 179913 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||| ||||| |||||||||||||| ||| | | ||||||||||| || Sbjct 179914 AGCAGCCGGTCCGCGACGAACTCGATGTACTGCGCCATCAACTCCGCGTTCATGCCAATC 179973 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||| ||||||||||| |||| | ||||| |||||| | || || || || || Sbjct 179974 AGCCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCATCCACAATA 180033 Query 868931 ATCTGCCTGGGCACG-TCGGCCGAGGGCTTG---TTGACGAGCATCGTGTAGAGCAGGCA 868986 |||| || | | || ||| || ||||| |||| | || |||| |||||||| Sbjct 180034 ATCT-CCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCA 180092 Query 868987 GGCAAAGTC 868995 || ||||| Sbjct 180093 TGCGAAGTC 180101 Score = 145 bits (160), Expect = 9e-29 Identities = 211/298 (71%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| || | |||||| ||||| || || | | |||||| ||| | Sbjct 180389 CCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGCGCCTCTGGCACCT 180448 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 || || ||||||| || || || |||||| || |||||||||||| |||||| Sbjct 180449 TCACGTCGCTCATGAAGCGCTGCGCAAGATTCTCGATGACTATGCCGTCGCTGCCGGCGA 180508 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || || || || |||||||| ||||| ||||| ||||| | |||| |||||| Sbjct 180509 AGAAGGCAAGCACATGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCGTTGCCCAGTCCT 180568 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 ||||| || ||||| | |||||| | |||||||| || ||| || |||| Sbjct 180569 TCATGTCGTTGCCCAGGTCGATCTCCTCCACCGTCCAGATGCAGCTCTCCTGCTCCTTGT 180628 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 || | ||| | | ||||| |||| ||||||||||| ||||| ||||| || Sbjct 180629 ACTTGCGCCAGATGTCATGGTACTGGATTGGGAAGAGGACGTAGCGGAACGGGTTCTC 180686 Score = 109 bits (120), Expect = 7e-18 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| |||||||| ||| | |||||||| || | || || ||||| || |||||||| Sbjct 180111 ACCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCTGGCATCAGACCGCGCTT 180170 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||| ||||| || | |||||||| || || ||||| |||||||| || |||||||| Sbjct 180171 CTTCAGCCAGAACAGCGCGCAGAACGACCCGGAAAAAAAAATGCCCTCCACCGCGGCAAA 180230 Query 869299 GCCGATGAGCCGCTC 869313 |||||| |||||||| Sbjct 180231 GCCGATCAGCCGCTC 180245 >seq111 Length=18804 Score = 98.7 bits (108), Expect = 1e-14 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 507103 GGAGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAA 507162 ||||||| | ||||| ||| | || || | |||||||| | |||||||||||||| | Sbjct 14172 GGAGCGGCTGAAGGGGAAGTACGGCCGGCTGCGCGGCAACTTGATGGGCAAGCGCGTAGA 14113 Query 507163 CTTTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGT 507222 |||| | || ||| | ||||||| | |||||| | |||||| | || || || ||||| Sbjct 14112 CTTTTCGGCCCGCACGGTCATCACCGGCGACCCAAACATCGACGTCGATGAAGTCGGCGT 14053 Query 507223 GCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGA 507266 || | | | || |||||| |||||||| ||||| |||| Sbjct 14052 ACCATTCTCCGTTGCCATGACGCTGACCTTTCCGGAGCGGGTGA 14009 >seq245 Length=3395 Score = 96.9 bits (106), Expect = 4e-14 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 732350 CGAGGTGCACCCGCTGCTCATGCTCGGGGCCTGCGCGTCCATCATCCCGTTCTCCAACCA 732409 |||| || ||||| | | || ||||| ||||| ||||| ||||||| | ||||||| Sbjct 2196 CGAGATGGACCCGTCGATGATTCTCGGCATTTGCGCCTCCATTATCCCGTACCCCAACCA 2255 Query 732410 CAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAG 732455 ||||||| | |||||||||| ||||||| | |||||||| |||||| Sbjct 2256 CAACCAGTCCCCGCGCAACACCTACCAGTCCGCCATGGGTAAGCAG 2301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107098824175964