Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2 165 1e-34 seq76 163 4e-34 seq55 154 2e-31 seq111 102 1e-15 seq245 96.9 5e-14 >seq2 Length=1059033 Score = 165 bits (182), Expect = 1e-34 Identities = 195/264 (74%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| || ||||| || |||| ||| |||||||| ||||| ||||| || ||||| || Sbjct 329185 CTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTTCGA 329126 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | |||||| || || || | ||| ||||| ||||| | |||||| || | ||| Sbjct 329125 CGTGCCGTTCGTACCAGCTATATAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCAGGCC 329066 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || ||||||||||| ||| ||| | |||||||| |||||||| ||||||||||| || Sbjct 329065 AATACCGCCGGCCGCTTTGCTGATCACCGCGCACTCCTTCAGCGTGTCGTAGATGCCGTC 329006 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| ||||| ||| ||| |||||||| ||||||| || ||||| Sbjct 329005 GATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGGTGCC 328946 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGC 2073803 ||| || ||||| || || || || Sbjct 328945 GGCGTTAAAGAGGGTCGGGGTGGC 328922 Score = 100 bits (110), Expect = 5e-15 Identities = 354/543 (65%), Gaps = 14/543 (3%) Strand=Plus/Minus Query 2069254 TCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCGGTC 2069313 || ||||| |||| ||| |||| || || | | ||||||||| ||||| | ||| ||| Sbjct 330588 TCCACGGTGAACTTGATCGCGTCCGCCGCGGCCTTGGTGCGCAGGTAGTAGACGCCAGTC 330529 Query 2069314 TTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCATTCGGGA-C 2069372 || || ||| ||| | ||| | |||| |||||||| ||| | ||| | Sbjct 330528 TTCAGCCCGGCCTCCCAGGAATAGAAGAGCATGGACGTGATCTGGCCGGAGGTGGGGCTC 330469 Query 2069373 GGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGCCAT 2069432 | | | ||||||| |||||||| |||||| | || | |||||||| ||||| Sbjct 330468 TGGAG-GAAGAGGTTCAGCGACTGCGACTGGTCAATGTACTGGCCGCGGTCGCGTGCCAT 330410 Query 2069433 GTCGATGGTCACGCGGT-TGGACACCTCCCACACGGTCTTGAACAGGGCCTTGAGATGCG 2069491 || || | ||| | |||| | ||||||||||||| | | || || | || | Sbjct 330409 ATCTATCAGCTTGCGCTGTGGA-ATCTCCCACACGGTCCGGTAAAGCTCCCTCAGGTCGT 330351 Query 2069492 GCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCCCTGCGCTGCGATGAGGCGGTCGC 2069551 ||||| ||| | | ||| | | ||||| | | ||||| || | Sbjct 330350 CCGGCATGCCGT-----TAATAGCGAGG-ATAGAGCCATTGTAAGAGATGATCTCGTTCC 330297 Query 2069552 GAAAGTCGGG-CGT-CCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGTTGAC 2069609 | | ||| ||| ||| || || ||||| || | | | ||| |||| ||| || Sbjct 330296 GCA--TCGACTCGTTCCATAGACCACGCGCGATGAGGTCCATGACGAGGTACTTGTTCAC 330239 Query 2069610 CACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCA 2069669 || | || ||||| ||||||||||| ||||||||| |||| | |||| | Sbjct 330238 AACAGGGAACTCGCCGCTCAGCACGCGGCGGACGTAGATGTTCGAGGTGAAGGGCTCGAA 330179 Query 2069670 CGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAG 2069729 |||| ||||||| || |||||||| || | || || |||||| | || || ||||| Sbjct 330178 GCACTCGTTGTTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGGGGCAACCAGCAG 330119 Query 2069730 CGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCAGCGGCC 2069789 |||||||||| ||| ||| |||| | || ||| | ||||||||||||| || Sbjct 330118 GGAGTTGCGCATGCCCACCTGCATCACCTTCTCCTTGAGGCTGGCCCAGTCCCAGCGACC 330059 Query 2069790 GCT 2069792 ||| Sbjct 330058 GCT 330056 Score = 89.7 bits (98), Expect = 8e-12 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 2071851 CACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTT 2071910 ||| || | ||||||||| || ||||||| | || ||||| ||||| || || | Sbjct 329347 CACACGCCTCATAAACAGATCTGGGATCCACAGCGCATAGAAGAGGTCGCGGGCGCGCTG 329288 Query 2071911 CTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGG 2071970 || || || || ||| |||||| || || | | || |||||||||||| || Sbjct 329287 GTCATCTTTTCCCGTGTTGCGTTTCAGCAGCAGAAAGCCAAAGACGTCGGCGTGCCAGGG 329228 Query 2071971 CTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||| || ||| ||||||||||||||||||||| ||||| || Sbjct 329227 CTCGAGATAGACGGCAAAGGCGCCCTTGCGCTTACCGCCACC 329186 >seq76 Length=120750 Score = 163 bits (180), Expect = 4e-34 Identities = 242/339 (71%), Gaps = 8/339 (2%) Strand=Plus/Minus Query 793869 GACGTCCTCTCCGTCCTCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCG 793928 ||||| | |||||| ||| | ||||| ||||| ||||| ||||| | | |||| Sbjct 112234 GACGTGCCCTCCGTGCTCA---TCACGCCGGCCTTCTGGTACTCCCCCACCCTCTTCTCG 112178 Query 793929 AAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTC 793988 || ||||| || ||||||| |||||||||| |||||| | |||||| | | || Sbjct 112177 AAGAAGTTCGTTTTGCCCTGCAGCGAGATCATCTCCATGAAATCGAACGGCTGCGTCGAG 112118 Query 793989 AGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTAC 794048 ||||||||||||| ||||||||| | ||||| ||||| |||||||| || |||||| Sbjct 112117 TGGTAGTGCTTCTCCTCGCCGAGCGACACCAGCAGCCGGTCCGCGACGAACTCGATGTAC 112058 Query 794049 TGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAAC 794108 || ||| || | ||||||||||| || ||| ||| ||||||| |||| || ||| Sbjct 112057 TGCGCCATCAGCTCCGCGTTCATGCCAATCAGCCGCACCGGCAGCGCGTCGCAGATGAAC 111998 Query 794109 TCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCACG-TCGGACGACGGCTT 794167 || |||||| | || || || | ||||||| || | | || ||| || | |||| Sbjct 111997 TCGCGCTCGATGTTCACCGCATCCACAATGATCT-CCAGCACGCGCTCGCGCGGCAGCTT 111939 Query 794168 G---TCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTC 794203 | | || | || |||| |||||||| || ||||| Sbjct 111938 GTGCTTGATGTGCGAGTTGTACAGCAGGCATGCGAAGTC 111900 Score = 123 bits (136), Expect = 4e-22 Identities = 187/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || || | || || |||||||||| || || ||||| || |||||| Sbjct 111565 GCCTCTGGCACCTTCACGTCGCTCATGAAGCGCTGCGCAAGATTCTCGATGACTATGCCG 111506 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 |||||| ||||||| ||||| || || |||||||| ||||| ||||| ||||| | ||| Sbjct 111505 TCGCTGCCGGCGAAGAAGGCAAGCACATGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGC 111446 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 | |||||| | ||||| ||| ||||||| |||||| | ||||| | | || | Sbjct 111445 GTTGCCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCACCGTCCAGATGCAGCTC 111386 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 || || |||||| | ||| || ||||| |||| ||||| || || |||| Sbjct 111385 TCCTGCTCCTTGTACTTGCGCCAGATGTCATGGTACTGGATTGGGAAGAGGACGTAGCGG 111326 Query 796390 TTGGGGTTCTCGCGTAGCAGCGGCTC 796415 |||||||| | |||||||||| Sbjct 111325 AACGGGTTCTCCTGCTGCAGCGGCTC 111300 Score = 107 bits (118), Expect = 3e-17 Identities = 218/324 (67%), Gaps = 6/324 (2%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| |||||||| ||| | |||||||| || || || ||||| || |||||||| Sbjct 111890 ACCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCTGGCATCAGACCGCGCTT 111831 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| ||||| || | || ||||| || || || || |||||||| || |||||||| Sbjct 111830 CTTCAGCCAGAACAGCGCGCAGAACGACCCGGAAAAGAAAATGCCCTCCACCGCGGCAAA 111771 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 ||||| |||||||| ||| | | || | | ||||||| || ||||| Sbjct 111770 GCCGATCAGCCGCTCCTGAAAGCTCGCGCTGCTCCC------GATCCACCGCACGGCCCA 111717 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 ||| ||||| ||| | | || | ||| | || ||| | | || | |||||| Sbjct 111716 CTCCGCCTTCTTCTGGATGCACGGGATCGTCTGTATCGCGTGCAGCAGCCGCAGCTTCTC 111657 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | |||| ||| ||| ||||| | || | ||||| ||||| ||||||||||| || Sbjct 111656 CTCGCTGTCCGTGATGTACGTGTCCAGCAGCACAGAGTACGTCTCCGAGTGGATGTTCTC 111597 Query 794640 GATGGCGATCTGGAAGCCATAAAA 794663 || | |||||| || || || Sbjct 111596 CATCATCAGCTGGAACCCGTAGAA 111573 >seq55 Length=202884 Score = 154 bits (170), Expect = 2e-31 Identities = 240/339 (71%), Gaps = 8/339 (2%) Strand=Plus/Plus Query 793869 GACGTCCTCTCCGTCCTCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCG 793928 ||||| | |||||| ||| | ||||| ||||| ||||| ||||| || |||| Sbjct 179767 GACGTGCCCTCCGTGCTCA---TCACGCCGGCCTTCTGGTACTCCCCCACCTTCCTCTCG 179823 Query 793929 AAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTC 793988 || ||||| || ||||||| |||||||||| |||||| | |||||| | | || Sbjct 179824 AAGAAGTTTGTTTTGCCCTGCAGCGAGATCATCTCCATGAATTCGAACGGCTGCGTCGAG 179883 Query 793989 AGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTAC 794048 ||||||||||||| ||||||||| | ||||| ||||| |||||||| || |||||| Sbjct 179884 TGGTAGTGCTTCTCCTCGCCGAGCGACACCAGCAGCCGGTCCGCGACGAACTCGATGTAC 179943 Query 794049 TGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAAC 794108 || ||| | | ||||||||||| || ||| ||| ||||||| |||| || ||| Sbjct 179944 TGCGCCATCAACTCCGCGTTCATGCCAATCAGCCGCACCGGCAGCGCGTCGCAGATGAAC 180003 Query 794109 TCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCACG-TCGGACGACGGCTT 794167 || |||||| | || || || | || |||| || | | || ||| || | |||| Sbjct 180004 TCGCGCTCGATGTTCACCGCATCCACAATAATCT-CCAGCACGCGCTCGCGCGGCAGCTT 180062 Query 794168 G---TCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTC 794203 | | || | || |||| |||||||| || ||||| Sbjct 180063 GTGCTTGATGTGCGAGTTGTACAGCAGGCATGCGAAGTC 180101 Score = 123 bits (136), Expect = 4e-22 Identities = 187/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || || | || || |||||||||| || || ||||| || |||||| Sbjct 180436 GCCTCTGGCACCTTCACGTCGCTCATGAAGCGCTGCGCAAGATTCTCGATGACTATGCCG 180495 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 |||||| ||||||| ||||| || || |||||||| ||||| ||||| ||||| | ||| Sbjct 180496 TCGCTGCCGGCGAAGAAGGCAAGCACATGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGC 180555 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 | |||||| | ||||| ||| ||||||| |||||| | ||||| | | || | Sbjct 180556 GTTGCCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCACCGTCCAGATGCAGCTC 180615 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 || || |||||| | ||| || ||||| |||| ||||| || || |||| Sbjct 180616 TCCTGCTCCTTGTACTTGCGCCAGATGTCATGGTACTGGATTGGGAAGAGGACGTAGCGG 180675 Query 796390 TTGGGGTTCTCGCGTAGCAGCGGCTC 796415 |||||||| | |||||||||| Sbjct 180676 AACGGGTTCTCCTGCTGCAGCGGCTC 180701 Score = 113 bits (124), Expect = 7e-19 Identities = 219/324 (68%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| |||||||| ||| | |||||||| || || || ||||| || |||||||| Sbjct 180111 ACCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCTGGCATCAGACCGCGCTT 180170 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| ||||| || | || ||||| || || ||||| |||||||| || |||||||| Sbjct 180171 CTTCAGCCAGAACAGCGCGCAGAACGACCCGGAAAAAAAAATGCCCTCCACCGCGGCAAA 180230 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 ||||| |||||||| ||| | | || | | ||||||| || ||||| Sbjct 180231 GCCGATCAGCCGCTCCTGAAAGCTCGCACTGCTCCC------GATCCACCGCACGGCCCA 180284 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 ||| ||||| ||| | | || | ||| | || ||| | | || | |||||| Sbjct 180285 CTCCGCCTTCTTCTGGATGCACGGGATCGTCTGTATCGCGTGCAGCAGCCGCAGCTTCTC 180344 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | |||| ||| ||| ||||| | || | ||||| ||||| ||||||||||| || Sbjct 180345 CTCGCTGTCCGTGATGTACGTGTCCAGCAGCACAGAGTACGTCTCCGAGTGGATGTTCTC 180404 Query 794640 GATGGCGATCTGGAAGCCATAAAA 794663 || | |||||| || || || Sbjct 180405 CATCATCAGCTGGAACCCGTAGAA 180428 >seq111 Length=18804 Score = 102 bits (112), Expect = 1e-15 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 429059 GGAGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAA 429118 |||||| | ||||| ||| | |||||| | |||||||| | |||||||||||||| | Sbjct 14172 GGAGCGGCTGAAGGGGAAGTACGGCCGGCTGCGCGGCAACTTGATGGGCAAGCGCGTAGA 14113 Query 429119 CTTTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGT 429178 |||| |||| ||| | ||||||| |||||| | |||||| | || || || ||||| Sbjct 14112 CTTTTCGGCCCGCACGGTCATCACCGGCGACCCAAACATCGACGTCGATGAAGTCGGCGT 14053 Query 429179 GCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGA 429222 || | | | || |||||| |||||||| ||||| |||| Sbjct 14052 ACCATTCTCCGTTGCCATGACGCTGACCTTTCCGGAGCGGGTGA 14009 >seq245 Length=3395 Score = 96.9 bits (106), Expect = 5e-14 Identities = 149/207 (72%), Gaps = 7/207 (3%) Strand=Plus/Plus Query 652894 CGAGGTGCACCCGCTGCTCATGCTGGGCGCCTGCGCTTCCATCATCCCCTTTTCCAACCA 652953 |||| || ||||| | | || || ||| ||||| ||||| ||||| | ||||||| Sbjct 2196 CGAGATGGACCCGTCGATGATTCTCGGCATTTGCGCCTCCATTATCCCGTACCCCAACCA 2255 Query 652954 CAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAGAGCAAGGCCGTCGT 653013 ||||||| | |||||||||| ||||||| | |||||||| |||||| || || | || | Sbjct 2256 CAACCAGTCCCCGCGCAACACCTACCAGTCCGCCATGGGTAAGCAGGCCATGGGCATC-T 2314 Query 653014 GTCGCTC-AACGCCGATCACGC-CATCGACACCGTGTCGCACGCCCTCTGCTACCCGCAG 653071 ||| ||| | | || || ||| |||||| | |||| ||||| ||||||||| Sbjct 2315 ACGCCTCGAACTTC-AACATGCGCATGGACACCACCGCCCACGTCCTCTTCTACCCGCAA 2373 Query 653072 GTGCCGCTGGTGCAGAC---GGCCATG 653095 ||| |||||| || ||||||| Sbjct 2374 AAACCGTTGGTGCGCACCAAGGCCATG 2400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916194063715988