Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq27 129 4e-25 seq15 118 7e-22 seq7 105 4e-18 seq485 98.7 6e-16 >seq27 Length=379527 Score = 129 bits (142), Expect = 4e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | ||| ||||||||| ||||| |||||||| || |||| | || Sbjct 499 CAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCCTC 440 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| |||||||||||||| || ||||||||| |||| | ||||||||||| Sbjct 439 CTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTC 380 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | |||| || | | ||| || || | | || || Sbjct 379 CTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATCGT 320 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || || ||||| || |||||||||||| Sbjct 319 CTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 286 Score = 98.7 bits (108), Expect = 6e-16 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| |||||||| || |||| | || ||||| ||||| |||||||| Sbjct 11 CTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 70 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||||| || |||||||| |||| | ||||||||||| Sbjct 71 GATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 109 Score = 82.4 bits (90), Expect = 5e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | ||| ||||||||| ||||| |||||||| || |||| | || Sbjct 271 CAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCCTC 212 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTG 34857 ||||| ||||| |||||||||||||| || || Sbjct 211 CTCCAGCTGCTTGCCGGCGAAGATCAGACGCTG 179 >seq15 Length=500758 Score = 118 bits (130), Expect = 7e-22 Identities = 157/216 (73%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | ||| ||||||||| ||||| |||||||| || |||| | || Sbjct 224159 CAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCCTC 224100 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| |||||||||||||| || |||||||| |||| | ||||||||||| Sbjct 224099 CTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 224040 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || || || || || |||| || | | ||| || || | | || Sbjct 224039 CTGGATCTTGGCCTTCAC--ATTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATC 223982 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || || || ||||| || |||||||||||| Sbjct 223981 GTTTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 223946 >seq7 Length=654660 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | ||| ||||||||| ||||| |||| ||| ||| || | | | Sbjct 507 CAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTACGAGAGGGTGAGGCCGTA 448 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| |||||||||||||| | |||||||| ||| | ||||||||||| Sbjct 447 CTCCAGCTGCTTGCCGGCGAAGATCAGGGGCTGCTGGTCCGCCGGGATGCCCTCCTTGTC 388 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | |||| || | | ||| || || | | || || Sbjct 387 CTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATCGT 328 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || || ||||| || ||||||||||| Sbjct 327 CTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 295 >seq485 Length=1379 Score = 98.7 bits (108), Expect = 6e-16 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 34802 TAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGG 34861 |||||||| || |||| | || ||||| ||||| |||||||||||||| || |||||| Sbjct 1 TAGTCCGAGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGG 60 Query 34862 TCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTG 34921 || |||| | ||||||||||| | || || || ||| | |||| || | Sbjct 61 TCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTC 120 Query 34922 GCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATA 34981 | ||| || || | | || ||||| || || || ||||| || |||||||||||| | Sbjct 121 GGCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGGTG 180 Query 34982 GTGG 34985 |||| Sbjct 181 GTGG 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325690847064548