Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2 306 4e-78 seq76 118 1e-21 seq55 116 4e-21 >seq2 Length=1059033 Score = 306 bits (338), Expect = 4e-78 Identities = 602/870 (69%), Gaps = 29/870 (3%) Strand=Plus/Minus Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTT-CGGCGTCGCTGTACTGCACGATTTC 147518 || || || || || ||||| || |||||||| | ||||| || |||||| || || || Sbjct 329670 GCAATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACG-TGTACTCGACAATCTC 329612 Query 147519 GGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCA 147578 | ||| ||||| ||| || || || | ||| | ||| || || | ||||| Sbjct 329611 CGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCA 329552 Query 147579 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAA 147635 ||||| ||| |||| ||| |||| ||||| ||||||| |||| || | ||| ||| Sbjct 329551 TGCGTCCTTGTAGAGGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATGGCAAA 329492 Query 147636 CCTATGCAGGTCCTGCGCTCGCACCCGCT-GCCGATAGCGGCCCTCGTTTTCGTACCGCT 147694 || || ||||| || | | | || | || |||||||||| ||||| |||| Sbjct 329491 CCA---CACCTCCTGGGCCTGGATCGTCTTGACGCC-GCGGCCCTCGGACTCGTAGCGCT 329436 Query 147695 CGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACAC-TGATGCGGA 147753 |||| | |||||||||||| || || ||||||||| ||||| || ||| || || ||| Sbjct 329435 CGTAGAGCCGCTCAAACTCCTCACCATAGCAATCGCTGAGGCCCGGGCACGTGTTG-GGA 329377 Query 147754 CACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCAC 147813 |||||||| |||| | | || || || || | |||||||||||| || | |||| Sbjct 329376 TCCATCAGCGTCCACTTCCCCTCGCTTTTCACACGCCTCATAAACAGATCTGGGATCCAC 329317 Query 147814 AGCGCGTACATAAGATCGC--GCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAAT 147871 ||||| || | || |||| |||| || || || ||| |||||||||||| Sbjct 329316 AGCGCATAGAAGAGGTCGCGGGCGCGCTG--GTCATCTTTTCCCGTGTTGCGTTTCAGCA 329259 Query 147872 TAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTAC 147931 || | || | ||| ||||||||||||||| || | |||||||| | || || || | Sbjct 329258 GCAGAAAGCCAAAGACGTCGGCGTGCCAGGGCTCGAGATAGACGGCAAAGGCGCCCTTGC 329199 Query 147932 GCTTTCCG---CCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTT 147988 |||| ||| |||||||| || | ||| | ||||||| || ||||| | ||| || Sbjct 329198 GCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCA 329139 Query 147989 CCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGT 148048 | || ||| ||| |||||||| || | || | |||||| || || | | || Sbjct 329138 CGAGCCCGTTCGACGTGCCGTTCGTACCAGCTATATAGCTGCCCGCCGCGCGGATGTTGT 329079 Query 148049 GCACGTTAACGCCAATGCCGCC-GCCGTACTTTGAT-ATGGCAGCGCAATCGCCCAATGT 148106 |||||| | |||||| ||||| |||| ||||| | || | ||||| || || || Sbjct 329078 GCACGTGCAGGCCAATACCGCCGGCCG--CTTTGCTGATCACCGCGCACTCCTTCAGCGT 329021 Query 148107 CGTGTAGATGCCGTCGATGCTGTCGT-TTTTGACGCCAAGCAAAAAACACGAACACATTT 148165 ||||||||||||||||||||| | || |||||| | || || ||||| | ||||| Sbjct 329020 GTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGCC-ACCAGGAAGCACGAGCTCATTT 328962 Query 148166 GCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAA--TTTTTG 148223 |||| || | || || || || ||||| || | ||||| || || || || | Sbjct 328961 GCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTGG 328902 Query 148224 ACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGC 148283 | ||| | | ||||||||| ||| | || || ||||||||||||| || || Sbjct 328901 A--CATGAGGTCGTACGTCTCACGCACGTTCTTGAGATCTGCGCCGTGAATGCCGAGAGC 328844 Query 148284 GACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 || ||||||| ||| |||||||| || || Sbjct 328843 AACACGCATGAACATCTGCTGTGGACGCTC 328814 >seq76 Length=120750 Score = 118 bits (130), Expect = 1e-21 Identities = 251/363 (69%), Gaps = 14/363 (4%) Strand=Plus/Plus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||| || ||||||||||| |||||| | |||||||||||||| || |||||||||||| Sbjct 111843 ATGCCAGGGCTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGTCTACACACGGAC 111902 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCCT 47032 || || || || ||||| ||| | | || | || | | || | || | || Sbjct 111903 TTCGCATGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCG-TGCT 111961 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || || ||| ||||||| |||||| ||||| | ||||| |||||||| Sbjct 111962 GGAGATCATTGTGGATGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCGCTGCCG 112019 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCG-AATATATTGAGTTTGTGGCGG 47148 || || | || | ||||||||||| || ||| ||| | || || ||||| || |||| Sbjct 112020 GTGCGGC-TGATTGGCATGAACGCGGAGCTGATG-GCGCAGTACATCGAGTTCGTCGCGG 112077 Query 47149 ATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCG--TAATCCGTTTGA 47206 | || ||| ||||| |||||| | ||| | || |||| | ||||| || Sbjct 112078 ACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCA--CTACCACTCGACGCAGCCGTTCGA 112135 Query 47207 GTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGA 47266 || ||| | | || ||||| |||||||||| || || |||||||| | || || || Sbjct 112136 TTTCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTCTTCGAGAAGAGGGTGGGGGA 112195 Query 47267 GTA 47269 ||| Sbjct 112196 GTA 112198 >seq55 Length=202884 Score = 116 bits (128), Expect = 4e-21 Identities = 241/347 (69%), Gaps = 14/347 (4%) Strand=Plus/Minus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||| || ||||||||||| |||||| | |||||||||||||| || |||||||||||| Sbjct 180158 ATGCCAGGGCTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGTCTACACACGGAC 180099 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCCT 47032 || || || || ||||| ||| | | || | || | | || | || | || Sbjct 180098 TTCGCATGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCG-TGCT 180040 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || || ||| ||||||| |||||| ||||| | ||||| |||||||| Sbjct 180039 GGAGATTATTGTGGATGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCGCTGCCG 179982 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCG-AATATATTGAGTTTGTGGCGG 47148 || || | || | ||||||||||| ||| ||| ||| | || || ||||| || |||| Sbjct 179981 GTGCGGC-TGATTGGCATGAACGCGGAGTTGATG-GCGCAGTACATCGAGTTCGTCGCGG 179924 Query 47149 ATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCG--TAATCCGTTTGA 47206 | || ||| ||||| |||||| | ||| | || |||| | ||||| || Sbjct 179923 ACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCA--CTACCACTCGACGCAGCCGTTCGA 179866 Query 47207 GTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGA 47253 || ||| | | || ||||| |||||||||| || || ||||||| Sbjct 179865 ATTCATGGAGATGATCTCGCTGCAGGGCAAAACAAACTTCTTCGAGA 179819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476608268841120