Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2 116 4e-21 seq15 100 3e-16 seq27 96.9 4e-15 >seq2 Length=1059033 Score = 116 bits (128), Expect = 4e-21 Identities = 240/354 (68%), Gaps = 5/354 (1%) Strand=Plus/Plus Query 7735 GAAGACAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATAC 7794 |||||||||||||||||||| ||| |||||||| || ||||| || |||| Sbjct 328994 GAAGACAGCATCGACGGCATCTACGACACGCTGAAGGAGTGCGCGGTGATCAGCAAAGCG 329053 Query 7795 GGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCC 7854 | |||||| || || ||| |||| || || | ||||| || ||| || | Sbjct 329054 GCCGGCGGTATTGGCCTGCACGTGCACAACATCCGCGCGGCGGGCAGCTATATAGCTGGT 329113 Query 7855 ACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGA 7914 || ||||| | | | ||| | | ||| ||| | ||||| ||||| ||| | | || Sbjct 329114 ACGAACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAACAACACCGCCCGC 329173 Query 7915 CATGTAGACCAG---GGGGGAAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGG 7971 | || |||||| || || |||||||| |||||| |||| ||||| | ||||| ||| Sbjct 329174 TACGTGGACCAGGGTGGCGGTAAGCGCAAGGGCGCCTTTGCCGTCTATCTCGAGCCCTGG 329233 Query 7972 CACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGA-CAGCAA 8030 ||||| ||| | | | | || ||| ||||||| ||| || || |||| Sbjct 329234 CACGCCGACGTCTTTGGCTTTCTGCTGCTGAAACGCAACACGGGAAAAGATGACCAGC-G 329292 Query 8031 AGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGT 8084 || ||||| || |||| | ||||| | || ||||||||||||||||| || Sbjct 329293 CGCCCGCGACCTCTTCTATGCGCTGTGGATCCCAGATCTGTTTATGAGGCGTGT 329346 >seq15 Length=500758 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| |||||||| ||||| || ||||||||||| | ||| | Sbjct 224164 AGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGG 224105 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||||| || ||||| ||||| || Sbjct 224104 CCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 224045 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | |||||| || ||||| || || | Sbjct 224044 TTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCG 223985 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| | || || ||||| || ||||| Sbjct 223984 ATCGTTTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 223947 >seq27 Length=379527 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| |||||||| ||||| || ||||||||||| | ||| | Sbjct 504 AGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGG 445 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||||| || ||||| ||||| || Sbjct 444 CCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCC 385 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | |||||| || ||||| || || | Sbjct 384 TTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCG 325 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | || || ||||| || ||||| Sbjct 324 ATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505395291799840