Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 140 4e-28 seq19 86.0 8e-12 seq38 82.4 1e-10 seq7 82.4 1e-10 seq5 82.4 1e-10 >seq2 Length=1059033 Score = 140 bits (154), Expect = 4e-28 Identities = 559/865 (65%), Gaps = 19/865 (2%) Strand=Plus/Minus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || || || || || || | ||||| || |||||||| | | |||||||| | | Sbjct 329676 GGCAGCGCAATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGACGTGTACTCGACA 329617 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || |||| ||| || | ||| ||||| || | |||||| ||||| ||| || Sbjct 329616 ATCTCCGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTG 329557 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||| || ||||||||||| ||| | ||| |||||||| |||| || | || || Sbjct 329556 TTGCATGCGTCCTTGTAGAGGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATG 329497 Query 111410 GCCTTCCAAACATCGGCGGC-TGGTACAATGGCGTTG--GCC-CGTCCCTCCGCCTCGTA 111465 || ||| || || ||| ||| || | ||| ||| || ||||| | |||||| Sbjct 329496 GCAAACCACACCTCCTGGGCCTGG----ATCGTCTTGACGCCGCGGCCCTCGGACTCGTA 329441 Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGCCTTGT 111524 |||||| |||||||||||||| | || ||| ||| || || | ||| Sbjct 329440 GCGCTCGTAGAGCCGCTCAAACTCCTCACC-ATAGCAATCGCTGAGGCCCGGGCACGTGT 329382 Query 111525 CTGGACAGAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGA 111583 ||| | || | ||| || || | | ||| | ||| |||| || || ||||| Sbjct 329381 TGGGATCCATCAGCGTCCACTTCCCCTCGCTTTTCA-CACGCCTCATAAACAGATCTGGG 329323 Query 111584 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 111643 |||||||| | | ||||| || | || || || | || |||| || Sbjct 329322 ATCCACAGCGCATAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTC 329263 Query 111644 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 111703 | | || || | | || || |||||||| ||||| |||||||| || | | ||| Sbjct 329262 AGCAGCAGAAAGCCAAAGACGTCGGCGTGCCAGGGCTCGAGATAGACGGCAAAGGCGCCC 329203 Query 111704 TTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 111760 || || || ||| | || | || ||||| || ||| ||| || ||||| |||||| Sbjct 329202 TTGCGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATT 329143 Query 111761 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTG-GCTCTCAC 111819 || | | || | || || || || || ||| || | || | | Sbjct 329142 GGCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTATAT-AGCTGCCCGCCGCGCGGAT 329084 Query 111820 ATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGA-GATTTGCGCACACTCCGTAA 111878 | || | ||||| |||||||| || ||| ||||| ||| ||| |||||| | | Sbjct 329083 GTTGTGCACGTGCAGGCCAATACCGCCGGCCG-CTTTGCTGATCACCGCGCACTCCTTCA 329025 Query 111879 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 111938 | || | ||||| |||| ||| ||| ||||| || | |||||||| | || Sbjct 329024 GCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCA 328965 Query 111939 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTT 111998 | ||||| | || || || || || |||||||| || || ||||| |||| | || | Sbjct 328964 TTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCT 328905 Query 111999 GGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTG 112058 |||||| |||||| ||||| || | | ||| | ||||| ||||||| | Sbjct 328904 TGGACATGAGGTCGTACGTCTCACGCACGTTCTTGAGATCTGCGCCGTGAATGCCGAGAG 328845 Query 112059 CGACCCGCATGAACATGTACTGTGG 112083 | || ||||||||||| | |||||| Sbjct 328844 CAACACGCATGAACATCTGCTGTGG 328820 >seq19 Length=458113 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 145284 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 145343 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 188396 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 188337 Query 145344 GGTAGGA 145350 ||||||| Sbjct 188336 GGTAGGA 188330 >seq38 Length=313407 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 159484 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 159543 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 159544 CAGGTAGGAG 159553 >seq7 Length=654660 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 236657 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 236598 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 236597 CAGGTAGGAG 236588 >seq5 Length=874999 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 222008 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 221949 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 221948 CAGGTAGGAG 221939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028137603200