Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq76 129 7e-25 seq55 111 2e-19 >seq76 Length=120750 Score = 129 bits (142), Expect = 7e-25 Identities = 351/531 (66%), Gaps = 20/531 (4%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || ||||| |||| ||||||||||||||| || || || | || ||| ||||||| Sbjct 112198 TACTCCCCCACCCTCTTCTCGAAGAAGTTCGTTTTGCCCTGCAGCGAGATCATCTCCATG 112139 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTC--CAATCTGTTTGAGGAGAC 129845 ||||| || || | | | |||| | |||| ||| | | | || || | Sbjct 112138 AAATCGAACGGCTGCGTCGAGTGGTAG--TGCTTCTCCTCGCCGAGCGACACCAGCAGCC 112081 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | |||| |||| |||| ||||||| | |||| ||| | |||||| || || || Sbjct 112080 GGTCCGCGACGAACTCGATGTACTGCGCCATCAGCTCCGCGTTCATGCCAATCAGCCGCA 112021 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 || |||||||| |||||||| | ||| |||| ||| || ||| | ||| | Sbjct 112020 CCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCATCCACAATGATCTCCA 111961 Query 129966 GAATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTCCACG---GC 130017 | | | ||| || | ||| || ||| | || ||| | || || | || Sbjct 111960 GCACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGCGAGTTGTACAG---CAGGCATGC 111906 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 || ||| ||| ||||||||||| || |||||||| || || ||| ||| ||||| Sbjct 111905 GAAGTCCGTGTGTAGACCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCTGG 111846 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 ||| ||||| |||||||||| |||||| | ||| || || || || || ||||| || || Sbjct 111845 CATCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCGGAAAAGAAAATGCC 111786 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCA 130197 |||||| || || | | || ||||| || ||| | | | | | ||| Sbjct 111785 CTCCACCGCGGCAAAGCCGATCAGCCGCTCCTGAA---AGCTCGCGCTGCTCCCGATCCA 111729 Query 130198 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | || ||||||| |||||| |||| ||| ||||||| ||||| ||||| Sbjct 111728 CCGCACGGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGTATCGC 111678 >seq55 Length=202884 Score = 111 bits (122), Expect = 2e-19 Identities = 347/531 (65%), Gaps = 20/531 (4%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || ||||| ||| | |||||||||||||||| || || | || ||| ||||||| Sbjct 179803 TACTCCCCCACCTTCCTCTCGAAGAAGTTTGTTTTGCCCTGCAGCGAGATCATCTCCATG 179862 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTC--CAATCTGTTTGAGGAGAC 129845 || || || || | | | |||| | |||| ||| | | | || || | Sbjct 179863 AATTCGAACGGCTGCGTCGAGTGGTAG--TGCTTCTCCTCGCCGAGCGACACCAGCAGCC 179920 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | |||| |||| |||| ||||||| | |||| ||| | |||||| || || || Sbjct 179921 GGTCCGCGACGAACTCGATGTACTGCGCCATCAACTCCGCGTTCATGCCAATCAGCCGCA 179980 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 || |||||||| |||||||| | ||| |||| ||| || ||| | || | Sbjct 179981 CCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCATCCACAATAATCTCCA 180040 Query 129966 GAATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTCCACG---GC 130017 | | | ||| || | ||| || ||| | || ||| | || || | || Sbjct 180041 GCACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGCGAGTTGTACAG---CAGGCATGC 180095 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 || ||| ||| ||||||||||| || |||||||| || || ||| ||| ||||| Sbjct 180096 GAAGTCCGTGTGTAGACCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCTGG 180155 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 ||| ||||| |||||||||| |||||| | ||| || || || || || || || || || Sbjct 180156 CATCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCGGAAAAAAAAATGCC 180215 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCA 130197 |||||| || || | | || ||||| || ||| | | | | | ||| Sbjct 180216 CTCCACCGCGGCAAAGCCGATCAGCCGCTCCTGAA---AGCTCGCACTGCTCCCGATCCA 180272 Query 130198 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | || ||||||| |||||| |||| ||| ||||||| ||||| ||||| Sbjct 180273 CCGCACGGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGTATCGC 180323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618431396623520