Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 125 8e-24 >seq2 Length=1059033 Score = 125 bits (138), Expect = 8e-24 Identities = 557/865 (64%), Gaps = 19/865 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| | ||||||||||| || || |||| ||||| || | ||| | | || Sbjct 328820 CCACAGCAGATGTTCATGCGTGTTGCTCTCGGCATTCACGGCGCAGATCTCAAGAACGTG 328879 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 ||||| |||||| |||||| | || | |||| ||||| || || |||||||| Sbjct 328880 CGTGAGACGTACGACCTCATGTCCAAGGGCTTCTTCACCCACGCCACCCCGACCCTCTTT 328939 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || || || || | || |||||| | |||||||| | || ||||| ||| Sbjct 328940 AACGCCGGCACCCCGAAGCCGCAAATGAGCTCGTGCTTCCTGGTGGCGTCGAAGGAAGAC 328999 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCT-CAAAGTGGGCTGG 104460 ||| |||| ||||| | || || | |||||| ||| ||| ||||| || | || Sbjct 329000 AGCATCGACGGCATCTACGACACGCTGAAGGAGTGCGCGGTGATCAGCAAAGCGGCC-GG 329058 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAA 104519 |||||||| ||||| | || | | | || | || ||| || || | Sbjct 329059 CGGTATTGGCCTGCACGTGCACAACATCCGCGCGGCGGGCAGCTA-TATAGCTGGTACGA 329117 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || || | || | | |||||||| ||||| || ||| ||| || ||||| | Sbjct 329118 ACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAACAACACCGCCCGCTACG 329177 Query 104580 TAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 104636 | | || | ||| || || ||||| | | || |||||||| ||||| ||||||| Sbjct 329178 TGGACCAGGGTGGCGGTAAGCGCAAGGGCGCCTTTGCCGTCTATCTCGAGCCCTGGCACG 329237 Query 104637 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC 104696 | || || | | || || | || | |||| || | || || ||| || Sbjct 329238 CCGACGTCTTTGGCTTTCTGCTGCTGAAACGCAACACGGGAAAAGATGACCAGCGCGCCC 329297 Query 104697 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG-GAGAGT 104755 |||| ||||||| || || ||||| |||||||| || |||| | | || | | ||| Sbjct 329298 GCGACCTCTTCTATGCGCTGTGGATCCCAGATCTGTTTATGAGGCGTGTGAAAAGCGAGG 329357 Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAG 104815 || || ||| | || | ||| ||| | || || ||| |||| | |||||| Sbjct 329358 GG-AAGTGGACGCTGATGGATCCCAACACGTGCCCGGGCCTCAGCGATTGCTATGGTGAG 329416 Query 104816 GAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG-GGCGACTGCGACGGTGCC 104874 |||||||| || ||| |||||| || || || |||| | |||| | || Sbjct 329417 GAGTTTGAGCGGCTCTACGAGCGCTACGAGTCCGAGGGCCGCGGCGTC-AAGACGAT-CC 329474 Query 104875 AGCTGCC---GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931 || ||| || |||||| || || || |||| || | |||||| || || | Sbjct 329475 AG--GCCCAGGAGGTGTGGTTTGCCATCCTGGAGTCGCAGATCGAGACGGGCGGGCCGTT 329532 Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991 ||| || ||||| ||||| || ||| ||| || || |||||| | || |||||| Sbjct 329533 CATCCTCTACAAGGACGCATGCAACAGCAAGTCGAACCAGAAGAATCTTGGCACGATCAA 329592 Query 104992 GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAG-ATGAGACGGCTGTGT 105050 | | || || || || || || || | || | || | | | | |||||||| |||| Sbjct 329593 GTGCTCGAACCTATGCACGGAGATTGTCGAGTACAC-GTCGCCGCAGGAGACGGCGGTGT 329651 Query 105051 GTAACCTCGCATCAATCGCTCTCCC 105075 | |||||||| || || || || || Sbjct 329652 GCAACCTCGCCTCCATTGCGCTGCC 329676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583257212946080