Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 271 8e-68 >seq2 Length=1059033 Score = 271 bits (300), Expect = 8e-68 Identities = 527/758 (70%), Gaps = 24/758 (3%) Strand=Plus/Plus Query 53192 TTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTAC 53251 |||||||| || || | || || ||||| | || || | || |||||||||||| Sbjct 328832 TTCATGCGTGTTGCTCTCGGCATTCACGGCGCAGATCTCAAGAACGTGCGTGAGACGTAC 328891 Query 53252 GACTTAATGAGCCAAAAG-TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310 ||| | ||| |||| | | ||| || |||||||| || ||||| || ||||| || || Sbjct 328892 GACCTCATGT-CCAAGGGCTTCTTCACCCACGCCACCCCGACCCTCTTTAACGCCGGCAC 328950 Query 53311 GAATCACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATGAAGGATGACTCGATCGA 53367 | || || ||| |||| |||||||||||||| |||||| ||| ||||| Sbjct 328951 CCCGAAGCCGCAAATG---AGCTCGTGCTTCCTGGTGGCGTCGAAGGAAGACAGCATCGA 329007 Query 53368 CGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 |||||||||||| ||||| |||||||| || ||| ||| | | || ||||| || Sbjct 329008 CGGCATCTACGACACGCTGAAGGAGTGCGCGGTGATCAGCAAAGCGGCCGGCGGTATTGG 329067 Query 53428 TATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAG--GGGACGAACGGCGT 53484 | ||| ||| | ||| |||| ||| |||| | || || || ||||||||| Sbjct 329068 CCTGCACGTGCAC-AACATCCGCGCGGCGGGCAG--CTATATAGCTGGTACGAACGGCA- 329123 Query 53485 CGCCGAT-GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACC 53543 || ||| || ||||||| ||||| ||||||||||||||||| ||||| ||||| ||| Sbjct 329124 CGTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAACAACACCGCCCGCTACGTGGACC 329183 Query 53544 AGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACA 53603 ||||||| || ||||||||||| | || ||| |||| |||||||| |||||||||||| Sbjct 329184 AGGGTGGCGGTAAGCGCAAGGGCGCCTTTGCCGTCTATCTCGAGCCCTGGCACGCCGACG 329243 Query 53604 TTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACC 53663 | | | ||||| |||| | || ||| | || || |||| ||| |||| Sbjct 329244 TCTTTGGCTTTCTGCTGCTGAAACGCAACACGGGAAAAGATGACCAGCGCGCCCGCGACC 329303 Query 53664 TGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTG-GAGAAG-GACGAGGA 53721 | || || |||||||| || || || || ||| | ||| || ||| || | | | Sbjct 329304 TCTTCTATGCGCTGTGGATCCCAGATCTGTTTATG--AGGCGTGTGAAAAGCGAGGGGAA 329361 Query 53722 GTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTT 53781 |||| |||||| || ||| |||||| |||||| | | ||| ||||||||||| Sbjct 329362 GTGGACGCTGATGGATCCCAACACGTGCCCGGGCCTCAGCGATTGCTATGGTGAGGAGTT 329421 Query 53782 TAACGAGATGTATCGGACG-TACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAAGGCG 53839 | | | | || || || |||| ||| | |||||||| | |||| | || |||| Sbjct 329422 TGAGCGGCTCTA-CGAGCGCTACG-AGTCCGAGGGCCGCGGCGTCAAGACGATCCAGGCC 329479 Query 53840 CGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGC 53899 | ||||| ||| ||| ||||| || ||| | |||||||| ||||| ||| | Sbjct 329480 CAGGAGGTGTGGTTTGCCATCCTGGAGTCGCAGATCGAGACGGGCGGGCCGTTCATCCTC 329539 Query 53900 TACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAA 53937 |||||||| | |||| ||| ||||||||||| Sbjct 329540 TACAAGGACGCATGCAACAGCAAGTCGAACCAGAAGAA 329577 Score = 109 bits (120), Expect = 6e-19 Identities = 127/166 (77%), Gaps = 8/166 (5%) Strand=Plus/Plus Query 55477 GGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCAT 55536 |||| | |||||||||||||| || || || |||||||||||||| || | ||||| | Sbjct 330103 GGGCATGCGCAACTCCCTGCTGGTTGCCCCCATGCCAACCGCGTCCACCTCGCAGATTCT 330162 Query 55537 GGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCG-GACCCTAG 55595 |||||||||||| |||||||| | ||| | ||||||||| | ||||| | | || Sbjct 330163 CGGCAACAACGAGTGCTTCGAGCCCTTCACCTCGAACATCTACGTCCGCCGCGTGCTGAG 330222 Query 55596 CAGGTGAGTT---TGTCATGATCAACAAGCACCTCGTCAAGGACCT 55638 | || ||||| ||| || | |||||| ||||||||| |||||| Sbjct 330223 C-GGCGAGTTCCCTGT--TG-TGAACAAGTACCTCGTCATGGACCT 330264 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 153843 GAAAACGTTAGCCAACTTGGCACCGTAACCATTGCGACCGCCCGTCACGCGTTG-TTCCT 153901 ||||||||| | || ||| || ||| | || ||||| ||||||||||| | ||| |||| Sbjct 887004 GAAAACGTTCGTCAGCTTCGCGCCGAAGCCGTTGCGCCCGCCCGTCAC-CTTTGCCTCCT 886946 Query 153902 CGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGTTCAGGGATCCAGA 153958 | |||| |||||||||| ||| | ||||||||| ||||| | ||| || | ||||| Sbjct 886945 CATCGTCGTAGTTGGAGGAGGTGAGAAGGTGCCCGAAGATCATTTCCGGCACCCAGA 886889 Score = 82.4 bits (90), Expect = 8e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 55732 GGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGA 55791 |||| |||||||||| |||||||||||||||||| | ||||| || ||| || Sbjct 330361 GGAGCTTTACCGGACCGTGTGGGAGATTCCACAGCGCAAGCTGATAGATATGGCACGCGA 330420 Query 55792 TCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGA-ATCCTTCAC 55850 || || |||||| |||||||| ||||| |||||| ||||| | ||| || | | Sbjct 330421 CCGCGGCCAGTACATTGACCAGTCGCAGTCGCTGAACCTCTTCCTCCAGAGCCCCACCTC 330480 Query 55851 TGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGT 55910 |||| || | | || |||| ||| || ||| || || || ||||| || | | Sbjct 330481 CGGCC-AGATCACGTCCATGCTCTTCTATTCCTGGGAGGCCGGGCTGAAGACTGGCGTCT 330539 Query 55911 ACTATCTGCGGACC 55924 |||| ||||| ||| Sbjct 330540 ACTACCTGCGCACC 330553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212634621600