Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2 217 2e-51 seq27 149 7e-31 seq15 143 3e-29 seq7 127 2e-24 seq485 114 1e-20 seq76 105 8e-18 seq55 102 9e-17 seq67 95.1 1e-14 >seq2 Length=1059033 Score = 217 bits (240), Expect = 2e-51 Identities = 894/1386 (65%), Gaps = 44/1386 (3%) Strand=Plus/Minus Query 80395 GTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATC 80454 ||| | ||||| || ||||||||| ||||| ||||| | ||| ||| || ||||| Sbjct 330192 GTGAAGGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATG 330133 Query 80455 GGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGAC 80514 ||| | |||| ||| || || |||| ||| || | | | | ||| | | ||| | Sbjct 330132 GGGGCAACCAGCAGGGAGTTGCGCATGCCCACCTGCATCACCTTCTC-CTTGAGGCTGGC 330074 Query 80515 CAAAAATCAACCCCAACGCTGT--GACC----------CCACATGTCGTGCTGCAAGATG 80562 | | || | | |||||| | || |||||||||| ||||| ||| Sbjct 330073 CCAGTCCCAGCGAC--CGCTGTTGGGCCGCGCATTCTTCCACATGTCGAACTGCAGAATG 330016 Query 80563 CCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCA 80622 ||||| ||||| |||| ||| |||||||||||||||||| ||| |||||||| Sbjct 330015 CCCTCGCTGGCCGGGCTGCCCGTGAAGGTCTCGTACGGGCCCTCCTCCTTCGCCAGCTCC 329956 Query 80623 CACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGC-G 80681 |||| | | || || || || || |||| || |||||| |||| | Sbjct 329955 ATCGACGACTCGACCGCAGCAAAGTAGATCGTTTCGAAGATCTCCGCGTTCAC-CCGCTG 329897 Query 80682 CGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAAC 80741 ||||| | | | |||| || | ||| | ||||| |||| || || ||||| || Sbjct 329896 CGCCTCCGCCGAGACAAACGGCAGCCGCATGAGGATGAAGGCGTCCGCGAGCCCCTGCAC 329837 Query 80742 GCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCG-CTCGGCCTCCGGAATTGGGTAAA 80800 ||||| | |||| ||||||| |||| |||| || | || | || || ||||| Sbjct 329836 GCCGAGGCCGATGGGGCGGTTGCGCATGTTACTGCGGCGCGCCGTCTCGACC-GGGTAGT 329778 Query 80801 AGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTT 80860 |||| || || |||||||| ||||||||||| | | ||| || | || Sbjct 329777 AGTTGCGGTCAATAACGCGGTTGAGGTTGCGTGTGATCTGCTTTGTCACGGTGTAGAGAA 329718 Query 80861 TCTGAAAGTCGAATTGG---TTCCC--CTTC-ACAAATGCCGGAAGGCTCAGGGACGCCA 80914 ||| || | | | ||| | | || || || ||| || | ||| || | Sbjct 329717 GCTGGTGGTTCAGCTCGCGCTTCTCAACGTCGACGAAGCGCGGCAGCGCAATGGAGGCGA 329658 Query 80915 GATTGCACACGGCCACCTCTT-CAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTA 80973 | |||||||| ||| ||| | | || | || ||||||| || |||||||| | || Sbjct 329657 GGTTGCACACCGCCGTCTCCTGCGGCGAC-GTGTACTCGACAATCTCCGTGCATAGGTTC 329599 Query 80974 GAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAG 81033 || |||| || || || || || |||||||| |||||| |||||| |||||||||||| Sbjct 329598 GAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCATGCGTCCTTGTAG 329539 Query 81034 CACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGC 81093 ||| |||| || ||||||| ||| |||| |||||||| ||| | ||| | Sbjct 329538 AGGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAGGATGGCAAACCACACCTCCTGG 329479 Query 81094 GCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTCGAA 81152 |||| || | |||| | ||| |||| | | || |||| ||| | || || Sbjct 329478 GCCTGGATCGTCTTGACGCCGCGGCCCTCGGACTCGTAGCGCTCGTAGAGCCGC-TCAAA 329420 Query 81153 CTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTC 81212 || |||| | || ||||| | |||||| ||| || |||||| ||| | Sbjct 329419 CTCCTCACCATAGCAATCGCTGAGGCCCGGGCACGTGTTGGGATCCATCAGCGTCCACTT 329360 Query 81213 GGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTC 81272 ||| | | ||| | |||| || || |||||||| || || ||| ||||| Sbjct 329359 CCCCTCGCTTTTCACACGCCTCATAAACAGATCTGGGATCCACAGCGCATAGAAGAGGTC 329300 Query 81273 GCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTC 81332 |||| |||| || || | ||| |||| | || | |||||| | | || ||| Sbjct 329299 GCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTCAGCAGCAGAAAGCCAAAGACGTC 329240 Query 81333 CGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCCTGGTT 81389 || ||||| ||||| ||||| ||||| | | |||||||| || ||||||||||| Sbjct 329239 GGCGTGCCAGGGCTCGAGATAGACGGCAAAGGCGCCCTTGCGCTTACCGCCACCCTGGTC 329180 Query 81390 GACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACC 81449 ||||| ||||| || ||| || || || | ||| || | || || | ||| || Sbjct 329179 CACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTTCGACGTGCC 329120 Query 81450 GTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCC 81509 ||||||||| | ||| ||| ||||| | ||| | || || || || Sbjct 329119 GTTCGTACCAGCTATATAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCAGGCCAATACC 329060 Query 81510 ACCTGACCACTTTG-AAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGC 81568 || | || ||||| ||| || ||| |||| || || || || || ||||||| Sbjct 329059 GCC-GGCCGCTTTGCTGATCACCGCGCACTCCTTCAGCGTGTCGTAGATGCCGTCGATGC 329001 Query 81569 TATCTTTTTTC-ATGTCA--AGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGG 81625 | |||| ||| | | || || ||| | |||| ||| || || | | ||||| Sbjct 329000 TGTCTTCCTTCGACGCCACCAGGAAGCACGAGCT---CATTTGCGGCTTCGGGGTGCCGG 328944 Query 81626 CATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTT 81685 | || || || || ||||| ||||| |||| | | || ||||| ||||| || || | Sbjct 328943 CGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTGGACATGAGGTCGTACGTCT 328884 Query 81686 CCTTGACG--CGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTA 81743 | ||| | || | ||| | |||||||| |||| ||| |||||||| ||||| | Sbjct 328883 CACGCACGTTCTTG--AGATCTGCGCCGTGAATGCCGAGAGCAACACGCATGAACATCTG 328826 Query 81744 CTGGGG 81749 ||| || Sbjct 328825 CTGTGG 328820 Score = 125 bits (138), Expect = 8e-24 Identities = 291/431 (68%), Gaps = 12/431 (3%) Strand=Plus/Plus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043 |||||| ||||||| ||||||||| | | | | ||||| ||||| ||| || | Sbjct 888616 GACGGCTTCAAGCCCGGCCAGCGCAAGATCCTGTTCTCCTGCTTCAAGCGCAACTTGGTG 888675 Query 32044 AGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCAC 32103 | || ||||||| |||||| | |||||||| | ||||| | || || |||||| Sbjct 888676 AACTCTATCAAGGTGGTGCAGCTTGCTGGCTACGTCTCGGAGCACTCCGCGTACCACCAC 888735 Query 32104 GGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAAT 32163 |||||| ||||||| | || || ||| | || ||| ||||||| || || Sbjct 888736 GGCGAGCAGTCGCTCGTGCAGACGATCGTCGGAATGGCGCAGGACTTTGTGGGCAGCAAC 888795 Query 32164 AACCTGAACTTACTCGAGCCATC-TGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGA 32222 ||| | | || | || | ||| ||||| || || || || |||||||||||| Sbjct 888796 AACGTCCCGCTGCT-GCGCAAGGATGGTCAGTTCGGTACGCGTCTGCACGGTGGCAAGGA 888854 Query 32223 T---GCTGCGAGCTCCCGTTACATCTTCACCCGTCTC--GCACCTTCGACGCGCAAGATT 32277 || ||| || || |||||||||||||| ||| ||| ||| | || || Sbjct 888855 CCACGCCGCGGGC---CGCTACATCTTCACCCGGCTCATGCA-GGTCG-CCCGGGCCATC 888909 Query 32278 TTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAG 32337 || ||||| | ||||| ||| || ||||||| || ||||||| ||| ||| Sbjct 888910 TTTCACCCGGCCGACGACTTTGTGGTCGAGTACAAGGACGACGACGGTCTCTCGGTGGAG 888969 Query 32338 CCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGA 32397 || | ||||||| |||||| | |||||| | |||||||||| | |||||||| Sbjct 888970 CCTTTCTTCTACATTCCGGTCATCCCGATGGTGCTGGTGAACGGCACGACGGGCATCGGC 889029 Query 32398 ACGGGGTTCAG 32408 || |||||||| Sbjct 889030 ACCGGGTTCAG 889040 >seq27 Length=379527 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||||||||| || | || ||||| ||| | | Sbjct 287 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 346 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || |||||||||||||| || || ||||||||| Sbjct 347 GACACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAG 406 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || ||||| | || || || | ||||| || Sbjct 407 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAAC 466 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || ||||| || Sbjct 467 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 513 Score = 120 bits (132), Expect = 3e-22 Identities = 137/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 27422 AGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATT 27481 ||||||| ||||||||||| || | || ||||| ||| | | || | || | || Sbjct 186 AGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGCGACACGATCGAGAACG 127 Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541 ||||||| || || |||||||||||||| || || || |||||||||||||| || || | Sbjct 126 TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGTCTGATCTTCG 67 Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCA 27601 | || ||||| || ||||| | || || || | ||||| || |||| ||||| |||| Sbjct 66 CCGGCAAGCAGCTGGAGGACGGCCGCACGCTCTCGGACTACAACATCCAGAAGGAGTCCA 7 Query 27602 CTCT 27605 | || Sbjct 6 CGCT 3 >seq15 Length=500758 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| |||||||| || || | || ||||| ||| | | Sbjct 223947 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAAACGATCGCGCTGGAGGTGGAGCCGAGC 224006 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| ||||||| || || |||||||||||||| || || || |||||| Sbjct 224007 GACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 224066 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || ||||| | || || || | ||||| || Sbjct 224067 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAAC 224126 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || ||||| || Sbjct 224127 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 224173 >seq7 Length=654660 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || |||||||| ||||||||||| || | || ||||| ||| | | Sbjct 294 AATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAG 353 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | || ||||||| || || |||||||||||||| || || | ||||| Sbjct 354 CGACACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGGCGGACCA 413 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||| || || || || || ||||| || ||| | | | ||||| | |||| || Sbjct 414 GCAGCCCCTGATCTTCGCCGGCAAGCAGCTGGAGTACGGCCTCACCCTCTCGTACTACAA 473 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || ||||| || Sbjct 474 CATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 521 >seq485 Length=1379 Score = 114 bits (126), Expect = 1e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||||||||| || | || ||||| ||| | | Sbjct 176 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 117 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || |||||||||||||| || || || |||||| Sbjct 116 GACACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 57 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||||| || || || || || ||||| || ||||| | || || || | ||||| Sbjct 56 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTA 1 >seq76 Length=120750 Score = 105 bits (116), Expect = 8e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 64729 TTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAA 64788 |||||| ||||| || ||||||||||| ||||| ||||| | | |||||||| || Sbjct 111771 TTTGCCGCGGTGGAGGGCATTTTCTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAG 111830 Query 64789 AAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGG 64848 ||||| || ||||||||||| ||| |||| |||||||| ||||| || |||||||| Sbjct 111831 AAGCGCGGTCTGATGCCAGGGCTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGT 111890 Query 64849 CTCCAC 64854 || ||| Sbjct 111891 CTACAC 111896 >seq55 Length=202884 Score = 102 bits (112), Expect = 9e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 64729 TTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAA 64788 |||||| ||||| || ||||| ||||| ||||| ||||| | | |||||||| || Sbjct 180230 TTTGCCGCGGTGGAGGGCATTTTTTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAG 180171 Query 64789 AAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGG 64848 ||||| || ||||||||||| ||| |||| |||||||| ||||| || |||||||| Sbjct 180170 AAGCGCGGTCTGATGCCAGGGCTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGT 180111 Query 64849 CTCCAC 64854 || ||| Sbjct 180110 CTACAC 180105 >seq67 Length=167514 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 32052 GAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGC 32111 ||||||||| ||||||||||||||| | ||||| |||| | |||||||||||||| Sbjct 67253 GAAGGTGGCACAGCTGTCGGGCTACATCTCAGAGGCGTCGGCGTTCCACCACGGCGAGGC 67194 Query 32112 GTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAA 32171 ||||| |||| ||||| || || | || |||||||| ||| | || ||| | || Sbjct 67193 CTCGCTGCAGGAGACCATCGTGAAGATGGCGCAGAACTTCACCGGCGGCAACAACATCAA 67134 Query 32172 CTTACTCGAGCCATCTGGACAGTTTGG 32198 | | |||| |||| || ||||| || Sbjct 67133 CCTGCTCGTGCCAGAGGGCCAGTTCGG 67107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306892591040