Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq27 107 2e-18 seq15 105 6e-18 seq7 95.1 1e-14 seq485 89.7 4e-13 >seq27 Length=379527 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || |||||||||||| | || | || || ||||| || Sbjct 283 CGGCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCC 342 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 | |||| |||| |||| || || || || || ||||| || ||||| || || || Sbjct 343 GAGCGACACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCAGA 402 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||||| | || | ||||||||| || |||| || | || | || || || Sbjct 403 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTA 462 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||||| || |||||||| || | || |||| |||| |||| || ||| Sbjct 463 CAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 514 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 27006 ACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTC 27065 || |||||||||||| | || | || || ||||| ||| |||| |||| |||| || Sbjct 184 ACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGCGACACGATCGAGAACGTG 125 Query 27066 AAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCC 27125 || || || || ||||| || ||||| || || || || |||||| | || | |||| Sbjct 124 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGTCTGATCTTCGCC 65 Query 27126 GGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGAC 27184 ||||| || |||| ||| | || | || || |||||||| || |||||||| || Sbjct 64 GGCAAGCAGCTGGAGGACGGCCGCACGCTCTCGGACTACAACATCCAGAAGGAGTCCAC 6 >seq15 Length=500758 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 26983 ACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAAC 27042 || |||||||||| || || || || ||||||||||| | || | || || ||||| | Sbjct 223942 ACACCATGCAGATCTTCGTGAAGACGCTGACCGGCAAAACGATCGCGCTGGAGGTGGAGC 224001 Query 27043 CGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCG 27102 || |||| |||| |||| || || || || || ||||| || ||||| || || | Sbjct 224002 CGAGCGACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGG 224061 Query 27103 ATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATT 27162 | || ||||| | || | ||||||||| || |||| || | || | || || | Sbjct 224062 ACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACT 224121 Query 27163 ACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||||| || |||||||| || | || |||| |||| |||| || ||| Sbjct 224122 ACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 224174 >seq7 Length=654660 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || | || || ||||| ||| | Sbjct 295 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 354 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| || || || || || ||||| || ||||| || | || || Sbjct 355 GACACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGGCGGACCAG 414 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||| | || | ||||||||| || |||| || | ||| | || | |||||| Sbjct 415 CAGCCCCTGATCTTCGCCGGCAAGCAGCTGGAGTACGGCCTCACCCTCTCGTACTACAAC 474 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || |||| |||| |||| || || || Sbjct 475 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGGAT 524 >seq485 Length=1379 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || || || |||||||||||| | || | || || ||||| ||| Sbjct 178 CCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGA 119 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 |||| |||| |||| || || || || || ||||| || ||||| || || || | Sbjct 118 GCGACACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACC 59 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 | ||||| | || | ||||||||| || |||| || Sbjct 58 AGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGA 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434915725251840