Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq16 168 6e-37 >seq16 Length=488607 Score = 168 bits (186), Expect = 6e-37 Identities = 438/657 (67%), Gaps = 13/657 (2%) Strand=Plus/Plus Query 6553 GTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCA-ACC 6611 |||||| |||||| || || || || | || ||||| ||||| ||||| || ||| Sbjct 120125 GTGGTTGCGGTAGACGTGGGCGTCGCCGAGGGTGTGCACAAGCTCACCAGGCCGCAGACC 120184 Query 6612 CCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCC 6671 | || | || || || | | |||||||| ||||| || |||||||| || || | Sbjct 120185 CGTCGCCTTG-GCAATGAGGATGGTGAGCAGCGCGTAGGAGGCGATGTTGAAGGGGACAC 120243 Query 6672 CTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCC-CAT-TC-GCG- 6727 | | |||||||| | ||| || || || | | |||||| ||||| | | | || | | Sbjct 120244 CAAGACCCATGTCGCACGAGCGCTGGTACAACATGCAGGATAGCTCGCTCGTGTCTGTGT 120303 Query 6728 --ACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTC 6784 |||||||| || ||| || ||||||||| || ||||||||| | || | | Sbjct 120304 TCACGTAGAACTGAGCA-AGCAAGTGGCACGGCGGCAGCGCCATCTTTTGCAGCGCGCAC 120362 Query 6785 GGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATC 6844 |||||||| || | | || | | ||| | |||||| ||| | ||| || | Sbjct 120363 GGGTTCCAGGCAGTGACTAGGAGGCGGCGGTCGTTCGGGTTCGCCTTGATGGTCTCCACG 120422 Query 6845 ACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCC 6904 | | || | ||||||| | || | || |||| |||||| |||| || || Sbjct 120423 ATGAGCTTGATCTGGTCCACCCCTTCGCCGTCGTAGTTCGCTTCAAACCCCTTGTAATCT 120482 Query 6905 GCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGAT 6964 ||||| ||||| | ||||||||| |||||||| ||||| | ||| ||||| | Sbjct 120483 GCCCCGAAGTGGCGCCACTGGAAGCCGTAGACAGGGCCGAGGTCCATCTCCTTATTCTCT 120542 Query 6965 GGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCC 7024 | || || || |||| ||||| || || || |||| |||||||||| | | || Sbjct 120543 GTCAAGCCGCGGCTGTCGAGAAACTCGCGCGAGCCGTTGCCGTCCCAGATGTGAATGTCC 120602 Query 7025 CGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACC 7084 | | ||| || | |||| |||| | || ||||||||||||||||||| | Sbjct 120603 TTGTCTGCCAGCAGCTGCGCACTCGTCTCCCCGCGCAGGAACCACAGCAGCTCCTCGCAC 120662 Query 7085 ACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAA---ATTCGCCCCGAAGGTTG 7141 ||||| |||| | ||||| ||||||||||||||||| | | | | || ||| | Sbjct 120663 ACGCCACGCCAGAAGACACGCTTCGTCGTCAGCAGCGGCAGGCGGTTGTCGCGTAGGGAG 120722 Query 7142 TATCGGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTC 7198 | || ||| | |||||| | | || ||| ||| ||||| |||||| ||||| Sbjct 120723 AAGCGCATCTGGGCGCCGAAGAGGCCGATGGTGCCCACGCCGGTGCGGTCCTCCTTC 120779 Score = 168 bits (186), Expect = 6e-37 Identities = 438/657 (67%), Gaps = 13/657 (2%) Strand=Plus/Minus Query 34147 GAAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAA 34206 ||||| |||||| ||||| ||| ||| || | | |||||| | ||| || | | Sbjct 120779 GAAGGAGGACCGCACCGGCGTGGGCACCATCGGCCTCTTCGGCGCCCAGATGCGCTTCTC 120720 Query 34207 CCTTCGGGGCGAAT---TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGT 34263 ||| || | | | | ||||||||||||||||| ||||| | |||| |||||| Sbjct 120719 CCTACGCGACAACCGCCTGCCGCTGCTGACGACGAAGCGTGTCTTCTGGCGTGGCGTGTG 120660 Query 34264 CGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGG 34323 ||||||||||||||||||| || | |||| |||| | || ||| | | || Sbjct 120659 CGAGGAGCTGCTGTGGTTCCTGCGCGGGGAGACGAGTGCGCAGCTGCTGGCAGACAAGGA 120600 Query 34324 GGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATC 34383 | | |||||||||| |||| || || || ||||| |||| || || || || Sbjct 120599 CATTCACATCTGGGACGGCAACGGCTCGCGCGAGTTTCTCGACAGCCGCGGCTTGACAGA 120540 Query 34384 TCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGA 34443 ||||| ||| | ||||| |||||||| ||||||||| | ||||| ||||| || Sbjct 120539 GAATAAGGAGATGGACCTCGGCCCTGTCTACGGCTTCCAGTGGCGCCACTTCGGGGCAGA 120480 Query 34444 GTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGAT 34503 || |||| |||||| |||| || | || | ||||||| | || | | | Sbjct 120479 TTACAAGGGGTTTGAAGCGAACTACGACGGCGAAGGGGTGGACCAGATCAAGCTCATCGT 120420 Query 34504 CGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 || ||| | ||| |||||| | ||| | | || | | || ||||||||| Sbjct 120419 GGAGACCATCAAGGCGAACCCGAACGACCGCCGCCTCCTAGTCACTGCCTGGAACCCGTG 120360 Query 34564 GGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGT---CG 34619 | || | ||||||||| || ||||||||| || ||| || |||||||| | Sbjct 120359 CGCGCTGCAAAAGATGGCGCTGCCGCCGTGCCACTTGCT-TGCTCAGTTCTACGTGAACA 120301 Query 34620 C-GA-ATG-GGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGG 34676 | || | | | ||||| |||||| | | || || || ||| | |||||||| | || | Sbjct 120300 CAGACACGAGCGAGCTATCCTGCATGTTGTACCAGCGCTCGTGCGACATGGGTCTTGGTG 120241 Query 34677 TGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGT 34736 | || |||||||| || ||||| |||||||| | | || || || | || |||| Sbjct 120240 TCCCCTTCAACATCGCCTCCTACGCGCTGCTCACCATCCTCATTGC-CAAGGCGACGGGT 120182 Query 34737 -TGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCAC 34792 || ||||| ||||| ||||| || | || || || || |||||| |||||| Sbjct 120181 CTGCGGCCTGGTGAGCTTGTGCACACCCTCGGCGACGCCCACGTCTACCGCAACCAC 120125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448259643186240