Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq27 154 3e-32 seq15 145 2e-29 seq7 138 3e-27 seq485 122 2e-22 >seq27 Length=379527 Score = 154 bits (170), Expect = 3e-32 Identities = 164/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || |||| || || | || || Sbjct 498 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCCTCC 439 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 438 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC 379 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| |||||||| ||||| ||||| ||| || ||||| || | |||| Sbjct 378 TGGATCTTGGCCTTCACGTTCTCGATCGTGTC---GCTCGGCTCCACCTCCAGCGCGATC 322 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| || || | |||||| Sbjct 321 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 287 Score = 131 bits (144), Expect = 4e-25 Identities = 142/187 (76%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 210915 AGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTG 210974 || |||||||| || |||||||| || |||| || || | || || |||||||||||| Sbjct 3 AGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAGCTGCTTG 62 Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| || || || ||||| || || | || ||||||||||||||||| Sbjct 63 CCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCC 122 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 |||||||| ||||| ||||| ||| || ||||| || | ||||||||| || || Sbjct 123 TTCACGTTCTCGATCGTGTC---GCTCGGCTCCACCTCCAGCGCGATCGTCTTGCCGGTC 179 Query 211092 AGAGTCT 211098 || |||| Sbjct 180 AGCGTCT 186 >seq15 Length=500758 Score = 145 bits (160), Expect = 2e-29 Identities = 162/215 (75%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || |||| || || | || || Sbjct 224158 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCCTCC 224099 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 224098 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 224039 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| ||||| || ||||| ||||| ||| || ||||| || | |||| Sbjct 224038 TGGATCTTGGCCTTCACATTCTCGATCGTGTC---GCTCGGCTCCACCTCCAGCGCGATC 223982 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || ||||| || || | |||||| Sbjct 223981 GTTTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 223947 >seq7 Length=654660 Score = 138 bits (152), Expect = 3e-27 Identities = 161/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || | || ||||| || | Sbjct 506 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTACGAGAGGGTGAGGCCGTAC 447 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||| | || ||||| | || | || ||||||||| Sbjct 446 TCCAGCTGCTTGCCGGCGAAGATCAGGGGCTGCTGGTCCGCCGGGATGCCCTCCTTGTCC 387 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| |||||||| ||||| ||||| ||| || ||||| || | |||| Sbjct 386 TGGATCTTGGCCTTCACGTTCTCGATCGTGTC---GCTCGGCTCCACCTCCAGCGCGATC 330 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || || ||||| || || | ||||||| Sbjct 329 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATT 294 >seq485 Length=1379 Score = 122 bits (134), Expect = 2e-22 Identities = 135/179 (75%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || |||| || || | || || |||||||||||||| |||||||| ||||| || ||| Sbjct 1 TAGTCCGAGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGG 60 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 || || || | || ||||||||||||||||| |||||||| ||||| ||||| | Sbjct 61 TCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTC---G 117 Query 211059 CT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || | ||||||||| || || || ||||| || || | |||||| Sbjct 118 CTCGGCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159144692995580