Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq15 107 2e-18 seq27 102 7e-17 seq485 86.0 5e-12 >seq15 Length=500758 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 39053 TCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAAT 39112 ||| ||| || | | ||| | ||||| || |||||| ||| || || || || || | Sbjct 224178 TCACGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGT 224119 Query 39113 CGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGG 39172 | | || || || | || || ||||| ||||| || || || || ||||||||||| | Sbjct 224118 CCGAGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCG 224059 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACT 39232 || | || ||| |||||| ||| || || | || | | ||| ||||||| || Sbjct 224058 GCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCGGCT 223999 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| |||| || ||| |||| || |||||||| || || ||||| ||||| Sbjct 223998 CCACCTCCAGCGCGATCGTTTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 223947 >seq27 Length=379527 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39056 AGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG 39115 |||| || | | ||| | ||||| || |||||| ||| || || || || || || | Sbjct 515 AGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCG 456 Query 39116 CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGG 39175 || || || | || || ||||| ||||| || || || || ||||||||||| | | Sbjct 455 AGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGCG 396 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | || ||| |||||| ||| || || | || | | ||| ||||||| ||||| Sbjct 395 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCA 336 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||| || ||| | || || |||||||| || || ||||| ||||| Sbjct 335 CCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 287 Score = 89.7 bits (98), Expect = 4e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 39085 AGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTG 39144 |||||| ||| || || || || || || | || || || |||| || ||||| ||| Sbjct 3 AGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAGCTGCTTG 62 Query 39145 CCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGT 39204 || || || || |||||||||||||| | || | || ||| |||||| ||| || Sbjct 63 CCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCC 122 Query 39205 TTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGC 39264 || | || | | ||| ||||||| |||||| |||| || ||| | || || |||||| Sbjct 123 TTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGC 182 Query 39265 GT 39266 || Sbjct 183 GT 184 >seq485 Length=1379 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| ||||| || || || || ||||||||||| | || | || ||| ||| Sbjct 22 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 81 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| ||| || || | || | | ||| ||||||| |||||| |||| || ||| Sbjct 82 TCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATC 141 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||||||| || || ||||| ||||| Sbjct 142 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429543024337196