Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq16 107 2e-18 seq245 102 7e-17 >seq16 Length=488607 Score = 107 bits (118), Expect = 2e-18 Identities = 391/610 (64%), Gaps = 20/610 (3%) Strand=Plus/Plus Query 29632 CTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGT 29691 ||||||||| | | || | || ||||||| |||||||||| || || || ||||| Sbjct 120098 CTCGAGCTGCGCCTTGAGGGCATCAACGTGGTTGCGGTAGACGTGGGCGTCGCCGAGGGT 120157 Query 29692 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 29751 ||| |||| ||| || || || || || | | || || | | ||||| || | Sbjct 120158 GTGCACAAGCTCACCAGGCCGCAGACCCGTCGCCTTGGCAATGAGGATGGTGAGCAGCGC 120217 Query 29752 GTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTG 29811 |||| ||||||||| ||||| || || || |||||||| | || | |||||| | | Sbjct 120218 GTAGGAGGCGATGTTGAAGGGGACACCAAGACCCATGTCGCACGAGCGCTGGTACAACAT 120277 Query 29812 GCACGAGAGCTCTCC---GTC---GCTCACGTAAAACTGACACATGGCA-TGGCACGGAG 29864 ||| || ||||| | ||| | ||||||| |||||| || | | |||||||| | Sbjct 120278 GCAGGATAGCTCGCTCGTGTCTGTGTTCACGTAGAACTGAG-CAAGCAAGTGGCACGGCG 120336 Query 29865 GAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTT 29924 | || ||||| || | |||||||||||| || | || ||| | ||| | Sbjct 120337 GCAGCGCCATCTTTTGCAGCGCGCACGGGTTCCAGGCAGTGACTAGGAGGCGGCGGTCGT 120396 Query 29925 CTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCG-AG 29983 ||||| | ||||| |||||| | | | ||| |||| |||| || ||| | Sbjct 120397 TCGGGTTCGCCTTGATGGTCTCCACGATGAGCTTGATCTGGTCCA-CCCCTTCGCCGTCG 120455 Query 29984 TAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACC 30043 |||| | |||| || | ||||||||| ||||| || Sbjct 120456 TAGTTCGCTTCAAACCCCTTGTAATCTGCCCCGAAGTGGCGCCACTGGAAGCCGTAGACA 120515 Query 30044 GGTCCCAGG----TCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCT 30099 || || ||| ||||| | ||| |||| ||||| | |||| | ||| || | Sbjct 120516 GGGCCGAGGTCCATCTCCTTATTCTCTGT----CAAGCCGCGGCTGTCGAGAAACTCGCG 120571 Query 30100 GGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA 30159 || |||||| |||||||||| | | |||| || | ||| | | | || Sbjct 120572 CGAGCCGTTGCCGTCCCAGATGTGAATGTCCTTGTCTGCCAGCAGCTGCGCACTCGTCTC 120631 Query 30160 CCCTCTGACGAACCACAGCAGCTCCTC-CACGACGGCCTTCCAAAAGACCCTCTTGGTCG 30218 ||| | | |||||||||||||||||| ||| ||| | ||| ||||| | ||| |||| Sbjct 120632 CCCGCGCAGGAACCACAGCAGCTCCTCGCAC-ACGCCACGCCAGAAGACACGCTTCGTCG 120690 Query 30219 TGAGGAGGGG 30228 | || || || Sbjct 120691 TCAGCAGCGG 120700 >seq245 Length=3395 Score = 102 bits (112), Expect = 7e-17 Identities = 113/147 (77%), Gaps = 8/147 (5%) Strand=Plus/Plus Query 53531 ATGGGCGACAAGTTT-GCATCCTTCACGGCGCAAAAGGGGACATGCGGAGCGGTCCTGAC 53589 || |||||||||||| ||| || ||||| |||||||| || ||| ||| | Sbjct 2896 ATCGGCGACAAGTTTTGCAGCCGGCACGGA-CAAAAGGGCACCAACGGCA---TCCAGTT 2951 Query 53590 TC---AGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCC 53646 || ||||||||||||||||| || ||||| | ||||| ||||||||||||||||| Sbjct 2952 TCGCCAGGAGGACATGCCCTTCAACCGCGACGGCATCGTGCCGGACCTCATCATCAACCC 3011 Query 53647 CCACGCCTTTCCCTCCAGGATGACGGT 53673 ||||||| |||||||| | ||||| || Sbjct 3012 CCACGCCATTCCCTCCCGCATGACAGT 3038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406160764543912