Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq15 131 4e-25 seq27 127 5e-24 seq485 116 9e-21 seq7 109 1e-18 >seq15 Length=500758 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || ||||||||| | || |||||||| || || Sbjct 223950 CAGATCTTCGTGAAGACGCTGACCGGCAAAACGATCGCGCTGGAGGTGGA--GCCGAGCG 224007 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| |||||||| || || ||||| |||||||| || || ||||| |||||||||| Sbjct 224008 ACACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGC 224067 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||||||||| || ||||| || || || | || || | || || ||| Sbjct 224068 AGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAACA 224127 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 224128 TCCAGAAGGAGTCCACGCTGCACCTGGT 224155 >seq27 Length=379527 Score = 127 bits (140), Expect = 5e-24 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || |||||| | || |||||||| || || Sbjct 290 CAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGA--GCCGAGCG 347 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||||||||| || ||||| |||||||| || || ||||| || ||||||| Sbjct 348 ACACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAGC 407 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||||||||| || ||||| || || || | || || | || || ||| Sbjct 408 AGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAACA 467 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 468 TCCAGAAGGAGTCCACGCTGCACCTGGT 495 Score = 114 bits (126), Expect = 3e-20 Identities = 138/186 (74%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 177939 ACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACG 177996 || || || || || |||||| | || |||||||| || || |||| |||||||||| Sbjct 184 ACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGA--GCCGAGCGACACGATCGAGAACG 127 Query 177997 TCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCG 178056 | || ||||| |||||||| || || ||||| ||||||||||| || || ||||||| Sbjct 126 TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGTCTGATCTTCG 67 Query 178057 CCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAA 178116 |||| || ||||| || || || | || || | || || ||| |||| || || || | Sbjct 66 CCGGCAAGCAGCTGGAGGACGGCCGCACGCTCTCGGACTACAACATCCAGAAGGAGTCCA 7 Query 178117 CACTGC 178122 | |||| Sbjct 6 CGCTGC 1 >seq485 Length=1379 Score = 116 bits (128), Expect = 9e-21 Identities = 121/157 (77%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || |||||| | || |||||||| || || Sbjct 173 CAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGA--GCCGAGCG 116 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||||||||| || ||||| |||||||| || || ||||| |||||||||| Sbjct 115 ACACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGC 56 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 | || || ||||||||||| || ||||| || || || Sbjct 55 AGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGG 19 >seq7 Length=654660 Score = 109 bits (120), Expect = 1e-18 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || |||||| | || |||||||| || || Sbjct 298 CAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGA--GCCGAGCG 355 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||||||||| || ||||| |||||||| || || ||||| ||||||||| Sbjct 356 ACACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGGCGGACCAGC 415 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||||||||| || ||||| || | || || || | | || ||| Sbjct 416 AGCCCCTGATCTTCGCCGGCAAGCAGCTGGAGTACGGCCTCACCCTCTCGTACTACAACA 475 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 476 TCCAGAAGGAGTCCACGCTGCACCTGGT 503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203723611979448