Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20gerbilli_20[genbank_20GCA_5F000443025.1_202013-08-05] 492 sequences; 31,398,648 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq15 210 2e-49 seq27 197 1e-45 seq7 194 2e-44 seq485 149 6e-31 >seq15 Length=500758 Score = 210 bits (232), Expect = 2e-49 Identities = 189/236 (80%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 41628 CATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTAT 41687 |||||| ||||||||| || || | |||||| ||||||||| ||||||||| ||||| | Sbjct 224180 CATCAC-GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGT 224122 Query 41688 AGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGT 41747 |||| ||||| ||||| | || || ||||||||||||||||| ||||||||||| |||| Sbjct 224121 AGTCCGAGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGT 224062 Query 41748 CCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCG 41807 ||| || | || |||||||||| ||| || ||||| | | |||||||||| Sbjct 224061 CCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCG 224002 Query 41808 ACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||||||| || |||||||| || ||||||||||| ||||| ||||||||| Sbjct 224001 GCTCCACCTCCAGCGCGATCGTTTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 223946 >seq27 Length=379527 Score = 197 bits (218), Expect = 1e-45 Identities = 181/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | |||||| ||||||||| ||||||||| ||||| ||||| || Sbjct 514 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGA 455 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || ||||||||||||||||| ||||||||||| ||||| | || Sbjct 454 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGCGG 395 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||||| | | |||||||||| |||||| Sbjct 394 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCAC 335 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || ||||| || || ||||||||||| ||||| ||||||||| Sbjct 334 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 286 Score = 156 bits (172), Expect = 4e-33 Identities = 146/186 (78%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 41661 GCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCT 41720 |||||||| ||||||||| ||||| ||||| ||||| ||||| |||| || ||||||| Sbjct 1 GCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAGCTGCT 60 Query 41721 TGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTT 41780 |||||||||| ||||| ||||| ||||||| || | || |||||||||| ||| || Sbjct 61 TGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGG 120 Query 41781 GCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCA 41840 ||||| | | |||||||||| ||||||||||| || ||||| || || |||| Sbjct 121 CCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATCGTCTTGCCGGTCA 180 Query 41841 GCGTCT 41846 |||||| Sbjct 181 GCGTCT 186 Score = 114 bits (126), Expect = 1e-20 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | |||||| ||||||||| ||||||||| ||||| ||||| || Sbjct 286 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGA 227 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTG 41742 ||| ||||| | || || ||||||||||||||||| ||||| ||||| Sbjct 226 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTG 179 >seq7 Length=654660 Score = 194 bits (214), Expect = 2e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| || || | |||||| ||||||||| ||||||||| ||||| |||| ||| Sbjct 521 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTACGAG 462 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||| | ||| || ||||||||||||||||| |||||| |||| |||||||| || Sbjct 461 AGGGTGAGGCCGTACTCCAGCTGCTTGCCGGCGAAGATCAGGGGCTGCTGGTCCGCCGGG 402 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||||||| ||| || ||||| | | |||||||||| ||||||| Sbjct 401 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACC 342 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || ||||| || || ||||||||||| ||||| |||||||| Sbjct 341 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 295 >seq485 Length=1379 Score = 149 bits (164), Expect = 6e-31 Identities = 139/177 (79%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 41687 TAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGG 41746 ||||| ||||| ||||| | || || ||||||||||||||||| ||||||||||| ||| Sbjct 1 TAGTCCGAGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGG 60 Query 41747 TCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTC 41806 |||| || | || |||||||||| ||| || ||||| | | ||||||||| Sbjct 61 TCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTC 120 Query 41807 GACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | ||||||||||| || ||||| || || ||||||||||| ||||| ||||||||| Sbjct 121 GGCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301156830400