Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq22 129 1e-24 seq27 116 8e-21 >seq22 Length=644210 Score = 129 bits (142), Expect = 1e-24 Identities = 288/427 (67%), Gaps = 9/427 (2%) Strand=Plus/Minus Query 230218 TTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCT- 230276 |||||||| |||||||| | || |||||| ||| ||| ||||||| || | Sbjct 486087 TTTTCCGGATCCTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGATTG 486028 Query 230277 -CGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAG- 230334 || || | |||||| ||||| ||||||||||| || || | |||| || | Sbjct 486027 ACGTTCAGC--AACGAGCTCATCTCGCGCGACGAGGGCCTACACACGGACTTCG-CGTGT 485971 Query 230335 CTTATGTAT---TCAAAGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATT 230391 || |||| || | || || |||| || || |||| || | |||||| Sbjct 485970 CTGCTGTACAACTCGCACATCAAGCACAAACTGCCGCGCGAGCGCGTGCTGGAGATCATT 485911 Query 230392 ACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATT 230451 || || || | | |||| |||||||| |||||||| |||| || || ||| Sbjct 485910 GTGGATGCGGTGAACATCGAACGCGAGTTCATCTGTGACGCGCTTCCGGTGCGGCTGATT 485851 Query 230452 GGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTT 230511 |||||||| ||||| || |||| |||||||| || ||||| || ||||| | |||| Sbjct 485850 GGCATGAATGCTGAGCTGATGGCGCAGTACATTGAGTTCGTCGCGGACCGGCTGCTTGTG 485791 Query 230512 GCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATT 230571 | || || | ||||| |||||| | | | ||||||| || |||||| | || Sbjct 485790 TCGCTGGGCGAGGAGAAGCACTACAACGCAACTCAGCCCTTTGACTTCATGGAGATGATC 485731 Query 230572 TCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGT 230631 ||||| || || || || ||||||||||| ||| || | || || |||| | ||||| Sbjct 485730 TCGCTGCAGGGCAAAACAAACTTCTTCGAGAAGAAGGTGGGCGAGTACCAGAAGGCTGGT 485671 Query 230632 GTGATGA 230638 ||||||| Sbjct 485670 GTGATGA 485664 >seq27 Length=1043456 Score = 116 bits (128), Expect = 8e-21 Identities = 285/427 (67%), Gaps = 9/427 (2%) Strand=Plus/Minus Query 230218 TTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCT- 230276 |||||||| |||||||| | || |||||| ||| ||| ||||||| || | Sbjct 845684 TTTTCCGGATCCTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGGTTG 845625 Query 230277 -CGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAG- 230334 || || | |||||| ||||| ||||||||||| || || | |||| || | Sbjct 845624 ACGTTCAGC--AACGAGCTCATCTCGCGCGACGAGGGCCTACACACGGACTTCG-CGTGT 845568 Query 230335 CTTATGTAT---TCAAAGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATT 230391 || |||| || | || || |||| || || |||| || | |||||| Sbjct 845567 CTGCTGTACAACTCGCACATCAAGCACAAACTGCCGCGCGAGCGCGTGCTGGAGATCATT 845508 Query 230392 ACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATT 230451 || || || | | |||| |||||||| |||||||| |||| || || ||| Sbjct 845507 GTGGATGCGGTGAACATCGAACGCGAGTTCATCTGTGACGCGCTTCCGGTGCGGCTGATT 845448 Query 230452 GGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTT 230511 |||||||| ||||| || |||| |||||||| || ||||| || ||||| | |||| Sbjct 845447 GGCATGAATGCTGAGCTGATGGAGCAGTACATTGAGTTCGTCGCGGACCGGCTGCTTGTG 845388 Query 230512 GCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATT 230571 | || || | ||||| |||||| | | | ||||||| || |||||| | || Sbjct 845387 TCGCTGGGCGAGGAGAAGCACTACAACGCGACTCAGCCCTTTGACTTCATGGAGATGATC 845328 Query 230572 TCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGT 230631 ||||| || || || || |||||||| || ||| || | || || |||| | | || Sbjct 845327 TCGCTGCAGGGCAAAACGAACTTCTTTGAGAAGAAGGTGGGCGAGTACCAGAAGGCCGGC 845268 Query 230632 GTGATGA 230638 ||||||| Sbjct 845267 GTGATGA 845261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823525632050