Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq27 383 2e-101 seq22 383 2e-101 seq31 158 1e-33 seq9 91.5 2e-13 >seq27 Length=1043456 Score = 383 bits (424), Expect = 2e-101 Identities = 611/862 (71%), Gaps = 16/862 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||| || |||||||| ||| | ||| | |||||||| || |||| || Sbjct 846179 GAGCCGCTGCAGCAGGAGAACCCGTTCCGCTACGTTCTCTTCCCCATCCAGTACCACGAT 846120 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || ||| | ||||||| || |||||| | |||||| Sbjct 846119 ATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTAGAGGAGATCGACCTG 846060 Query 116696 TCCAAGGACACGAGCGACTGGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 ||| |||| || ||||||| | |||| ||||||| || || || || |||||||| Sbjct 846059 GGCAACGACATGAAGGACTGGGTGGCGCT-GAACGACGGGGAACGGCACTTTATCAAGCA 846001 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 |||||| || || ||||||| ||||||||||||||| ||||||||| | | ||||||| Sbjct 846000 CGTGCTCGCTTTCTTCGCCGGGAGCGACGGCATCGTCGTCGAGAATCTTGCCCAGCGTTT 845941 Query 116815 CGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 | | || || ||| ||||| | |||||||| |||||||| || ||| | |||| Sbjct 845940 C-ATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTCTACGGATTCCAGCTGATGATGG 845882 Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAG 116932 ||||| | ||||| || | || || || | ||||||||| | | | | ||| Sbjct 845881 AGAACATCCACTCAGAGACATACTCTGTGCTACTGGACACGTACATCACAGACAGC-GAG 845823 Query 116933 GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAG 116992 |||||||| || || || |||| ||| ||||||| || ||| || | ||||||| ||| Sbjct 845822 GAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATCCCATGCATCCAGAAGAAGGCGGAG 845763 Query 116993 TGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052 ||||| |||| ||||| | |||| || |||| ||||| ||| | | ||| Sbjct 845762 TGGGCCGTGCGGTGGATTGGGAGCAG---CGCGAGCTTCCAGGAGCGGCTGATCGGCTTT 845706 Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112 || || || ||||||||||||||||| || ||| ||| | || ||||| ||||| Sbjct 845705 GCCGCAGTGGAGGGCGTCTTCTTTTCCGGATCCTTCTGCGCGCTGTTCTGGCTGAAGAAG 845646 Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172 ||||| || ||||| || |||| |||||||||||||||||||| | |||||||| || Sbjct 845645 CGCGGTCTGATGCCGGGGTTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGCCTA 845586 Query 117173 CATTGCGACTTTGCCTGTTTGCTGTTCAA---GCATTTGGTGCAGCGACCG-AGCGCGGC 117228 || ||||| || ||| |||||| ||| ||| | ||| || | |||| | Sbjct 845585 CACACGGACTTCGCGTGTCTGCTGTACAACTCGCACATCAAGCACAAACTGCCGCGC-GA 845527 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAAG 117287 |||||| ||||||| | || ||||| |||||| | ||| ||| || || | Sbjct 845526 GCGCGTGCTGGAGATCATTGTGGATGCGGTGAACATCGAAC-GCGAGTTCATCTGTGACG 845468 Query 117288 CGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCG 117347 |||| |||||||| ||| | || | ||| || |||| ||| ||||| ||||||| Sbjct 845467 CGCTTCCGGTGCGGCTGATTGGCATGAATGCTGAGCTGATGGAGCAGTACATTGAGTTCG 845408 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407 |||| ||| ||||||| | ||||| || | |||||||||||| || | | || Sbjct 845407 TCGCGGACCGGCTGCTTGTGTCGCTGGGCGAGGAGAAGCACTACAACGCGACTCAGCCCT 845348 Query 117408 TGGACTTTATGAACCTCATCTC 117429 | ||||| ||| | | ||||| Sbjct 845347 TTGACTTCATGGAGATGATCTC 845326 >seq22 Length=644210 Score = 383 bits (424), Expect = 2e-101 Identities = 590/827 (71%), Gaps = 16/827 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||| || |||||||| ||| | ||| | |||||||| || |||| || Sbjct 486582 GAGCCGCTGCAGCAGGAGAACCCGTTCCGCTACGTTCTCTTCCCCATCCAGTACCACGAT 486523 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || ||| | ||||||| || |||||| | |||||| Sbjct 486522 ATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTAGAGGAGATCGACCTG 486463 Query 116696 TCCAAGGACACGAGCGACTGGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 ||| |||| || ||||||| | |||| ||||||| || || || || |||||||| Sbjct 486462 GGCAACGACATGAAGGACTGGGTGGCGCT-GAACGACGGGGAACGGCACTTTATCAAGCA 486404 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 |||||| ||||| ||||||| ||||||||||||||| ||||||||| | | ||||||| Sbjct 486403 CGTGCTTGCCTTCTTCGCCGGGAGCGACGGCATCGTCGTCGAGAATCTTGCCCAGCGTTT 486344 Query 116815 CGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 | | || || ||| ||||| | |||||||| |||||||| || ||| | |||| Sbjct 486343 C-ATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTCTACGGATTCCAGCTGATGATGG 486285 Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAG 116932 ||||| | ||||| || | || || || | ||||||||| | | | | ||| Sbjct 486284 AGAACATCCACTCAGAGACATACTCTGTGCTACTGGACACGTACATCACAGACAGC-GAG 486226 Query 116933 GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAG 116992 |||||||| || || || |||| ||| ||||||| || ||| || | ||||||| ||| Sbjct 486225 GAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATCCCATGCATCCAGAAGAAGGCGGAG 486166 Query 116993 TGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052 ||||| |||| ||||| | |||| || |||| ||||| ||| | | ||| Sbjct 486165 TGGGCCGTGCGGTGGATTGGGAGCAG---CGCGAGCTTCCAGGAGCGGCTGATCGGCTTT 486109 Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112 || || || |||||| |||||||||| || ||| ||| | || ||||| ||||| Sbjct 486108 GCCGCAGTGGAGGGCATCTTCTTTTCCGGATCCTTCTGCGCGCTGTTCTGGCTGAAGAAG 486049 Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172 ||||| || ||||| || |||| |||||||||||||||||||| | |||||||| || Sbjct 486048 CGCGGTCTGATGCCGGGATTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGCCTA 485989 Query 117173 CATTGCGACTTTGCCTGTTTGCTGTTCAA---GCATTTGGTGCAGCGACCG-AGCGCGGC 117228 || ||||| || ||| |||||| ||| ||| | ||| || | |||| | Sbjct 485988 CACACGGACTTCGCGTGTCTGCTGTACAACTCGCACATCAAGCACAAACTGCCGCGC-GA 485930 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAAG 117287 |||||| ||||||| | || ||||| |||||| | ||| ||| || || | Sbjct 485929 GCGCGTGCTGGAGATCATTGTGGATGCGGTGAACATCGAAC-GCGAGTTCATCTGTGACG 485871 Query 117288 CGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCG 117347 |||| |||||||| ||| | || | ||| || |||| |||| ||||| ||||||| Sbjct 485870 CGCTTCCGGTGCGGCTGATTGGCATGAATGCTGAGCTGATGGCGCAGTACATTGAGTTCG 485811 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAAC 117394 |||| ||| ||||||| | ||||| || | |||||||||||| Sbjct 485810 TCGCGGACCGGCTGCTTGTGTCGCTGGGCGAGGAGAAGCACTACAAC 485764 >seq31 Length=1340778 Score = 158 bits (174), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||| | |||| || || || | | Sbjct 826128 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTCGAGGTGGAGGCGAGC 826069 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 826068 GACACGATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 826010 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| |||||||| || | ||||| ||| |||||||| Sbjct 826009 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAA 825950 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||||||||| || ||| ||||| || | |||||| Sbjct 825949 CATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 825901 >seq9 Length=561584 Score = 91.5 bits (100), Expect = 2e-13 Identities = 81/100 (81%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| |||| ||||| |||||||| || | ||||| ||| ||||||||||||||||| Sbjct 347200 CATC-ACGCCGGCAAGCAGCTGGAGGAGGGACGCACGCTCTCGGACTACAACATCCAGAA 347142 Query 40878 GGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||| |||| ||||| || ||| ||||| || | |||||| Sbjct 347141 GGAGTCCACTCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 347102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218974591600