Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq31 127 2e-24 seq15 89.7 6e-13 seq24 87.8 2e-12 seq17 86.0 7e-12 >seq31 Length=1340778 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| |||||| || || ||||| || | || || || | Sbjct 825914 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCC 825973 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || ||||||||||| | ||| | || ||||||| Sbjct 825974 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 826033 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | ||||||||||| ||||| |||| || ||| Sbjct 826034 TCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCGAGCGCGATC 826093 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || |||||||| || ||||| ||||| Sbjct 826094 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 826128 >seq15 Length=606998 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 331757 CGGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTATACTA 331816 Query 60131 CCGAGGATTGAA 60142 ||||| | |||| Sbjct 331817 CCGAGAACTGAA 331828 >seq24 Length=832421 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 672658 CGGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTATACTA 672717 Query 60131 CCGAGGATTGA 60141 ||||| | ||| Sbjct 672718 CCGAGAACTGA 672728 >seq17 Length=623274 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 291110 CGGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTATACTA 291169 Query 60131 CCGAG 60135 ||||| Sbjct 291170 CCGAG 291174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817349829800