Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq27 95.1 3e-14 seq22 84.2 5e-11 >seq27 Length=1043456 Score = 95.1 bits (104), Expect = 3e-14 Identities = 355/544 (65%), Gaps = 22/544 (4%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || |||| ||| ||||||| |||| | |||||||| ||||| || || ||||| || Sbjct 845266 ACGCCGGCCTTCTGGTACTCGCCCACCTTCTTCTCAAAGAAGTTCGTTTTGCCCTGCAGC 845325 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGG-CGCAGTTGTACACCTTGTCGTACCCCAG 157362 || ||||| ||||| | || || || | | ||| |||||| ||| || | ||||| Sbjct 845326 GAGATCATCTCCATGAAGTCAAAGGGCTGAGTCGC-GTTGTAGTGCTTCTCCTCGCCCAG 845384 Query 157363 CTGGTTCAGCCAGTAG-TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGA 157421 | | || ||| | ||||| || |||| ||||||| ||| || | | | Sbjct 845385 C-GACACAAGCAGCCGGTCCGCGACGAACTCAATGTACTGCTCCATCAGCTCAGCATTCA 845443 Query 157422 TACCGATGAGCGCGACGGGAAGCGCCGACGAAATGAATTCGCACTCAACGCTAACAGCGT 157481 | || || ||| || |||||||| | ||||| |||| || | | | || || | Sbjct 845444 TGCCAATCAGCCGCACCGGAAGCGCGTCACAGATGAACTCGCGTTCGATGTTCACCGCAT 845503 Query 157482 GCTTGAAAATTTCATGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTGTAGA 157538 | | || || | || | ||| |||||||| | | ||||| ||| ||||| | Sbjct 845504 CCACAATGATCTCCAGCACGCGCTCGCGCGGCAGTTTGTGCTTGATGTGCGAGTTGTACA 845563 Query 157539 TGAGA-ACG-GAAG-CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGA 157595 ||| ||| |||| ||||| || || || ||||| | | |||||| ||| || Sbjct 845564 GCAGACACGCGAAGTCCGTG---TGTAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGA 845620 Query 157596 ACGACAAACCCTTGAACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCAC 157655 ||| ||| ||| | | ||||||||||||||| | | |||||||| || || Sbjct 845621 ACGTCAACCCCGGCATCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAAGGATCCGG 845680 Query 157656 TGAACTGCACGCCCTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAAGCGGTTT 157715 || |||||||||| || ||||||| |||| |||| ||||| | Sbjct 845681 AAAAGAAGACGCCCTCCACTGCGGCAAAGCCGATCAGCCGCTCC----TGGAAGC--TCG 845734 Query 157716 CGGGGTTC---ATCCACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGTCT 157772 || | || |||||| | | ||||| ||||||||| | |||| ||| ||||||| Sbjct 845735 CGCTGCTCCCAATCCACCGCACGGCCCACTCCGCCTTCTTCTGGATGCATGGGATCGTCT 845794 Query 157773 GGAT 157776 |||| Sbjct 845795 GGAT 845798 >seq22 Length=644210 Score = 84.2 bits (92), Expect = 5e-11 Identities = 342/529 (65%), Gaps = 20/529 (4%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| |||| | ||||| || ||||| || || ||||| || || ||||| ||||| Sbjct 485683 GTACTCGCCCACCTTCTTCTCGAAGAAGTTTGTTTTGCCCTGCAGCGAGATCATCTCCAT 485742 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 | || || || | | |||||| ||| || | |||||| | || ||| Sbjct 485743 GAAGTCAAAGGGCTGAGTTGCGTTGTAGTGCTTCTCCTCGCCCAGC-GACACAAGCAGCC 485801 Query 157378 G-TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGA 157436 | ||||| || |||| ||||||| | ||| || | | || || || ||| | Sbjct 485802 GGTCCGCGACGAACTCAATGTACTGCGCCATCAGCTCAGCATTCATGCCAATCAGCCGCA 485861 Query 157437 CGGGAAGCGCCGACGAAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCAT 157496 | |||||||| | ||||| |||| || | | | || || | | | || || Sbjct 485862 CCGGAAGCGCGTCACAGATGAACTCGCGTTCGATGTTCACCGCATCCACAATGATCTCCA 485921 Query 157497 GAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTGTAGATGAGA-ACG-GAAG- 157550 | || | ||| |||||||| | | ||||| ||| ||||| | ||| ||| |||| Sbjct 485922 GCACGCGCTCGCGCGGCAGTTTGTGCTTGATGTGCGAGTTGTACAGCAGACACGCGAAGT 485981 Query 157551 CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTTGA 157610 ||||| || || || ||||| | | |||||| ||| ||||| ||| ||| | Sbjct 485982 CCGTG---TGTAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAATCCCGGCA 486038 Query 157611 ACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCCCT 157670 | ||||||||||||||| | | |||||||| || || || | ||||| Sbjct 486039 TCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAAGGATCCGGAAAAGAAGATGCCCT 486098 Query 157671 CCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAAGCGGTTTCGGGGTTC---ATCC 157727 ||| || ||||||| |||| |||| || ||| | || | || |||| Sbjct 486099 CCACTGCGGCAAAGCCGATCAGCCGCTCCTGGA----AGC--TCGCGCTGCTCCCAATCC 486152 Query 157728 ACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGTCTGGAT 157776 || | | ||||| ||||||||| | |||| ||| ||||||||||| Sbjct 486153 ACCGCACGGCCCACTCCGCCTTCTTCTGGATGCATGGGATCGTCTGGAT 486201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073765918482880